Hg_chrom1_TN10mRNA_1343
Organism: Heterodera glycines Gene Locus: chr1:13893447-13895921 Feature type: polypeptideProtein Sequence
Length: 431
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.971 | 0.809 | 0.97 | 0.64 | 0.889 | 0.654 | 0.967 | 0.58 | 0.928 | 1.035 | 0.703 | 2.184 | 1.547 | 0.892 | 1.326 | 0.829 | 1.217 | 1.16 | 0.714 | 1.501 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1283
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-Not_Clustered
|
0.927
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— |
RRMETSANNLYKEKRIRG
|
— | — |
27-47
|
0.997
|
— | — |
0.002
|
— | — |
0.124
|
0.856
|
0.019
|
0.153
|
0.164
|
0.068
|
0.064
|
0.016
|
0.049
|
0.072
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001079
|
4.000
|
1.000
|
Hsc_gene_2564.t1
|
Hsc_gene_2564.t1
|
— |
P52899.1 Probable pyruvate dehydrogenase E1 component subunit alpha, mitochondrial [Caenorhabditis elegans]
|
KAI1723963.1 dehydrogenase e1 component domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004739|GO:0006086|GO:0016624|GO:0043231
|
GO:0005575_0.830|GO:0110165_0.730|GO:0016020_0.657|GO:0008150_0.647|GO:0005622_0.586|GO:0005737_0.573|GO:0043226_0.552|GO:0043229_0.534|GO:0043227_0.523|GO:0009987_0.518|GO:0043231_0.517
|
IPR001017+90-385+|IPR017597+83-394+|IPR029061+75-401+|IPR050642+55-405+
|
— |
PF00676+90-385+Dehydrogenase_E1_component
|
G3DSA:3.40.50.970:FF:000013+49-407+Pyruvate_dehydrogenase_E1_component_subunit_alpha
|
PTHR11516+55-405+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
430-431
|
1.000
|
1-429
|
6cfo_C
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.718
|
48122.110
|
7.830
|
4.500
|
22.970
|
12.761
|
42.227
|
57.773
|
12.297
|
10.673
|
52.668
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
red
|
1293.446
|
808.586
|
882.674
|
1388.669
|
2593.676
|
1711.007
|
1737.683
|
1325.376
|
747.649
|
1180.214
|
994.829
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.643
|
0.763
|
0.869
|
-0.585
|
— |
-0.473
|
0.535
|
— | — | — | — | — |
No JSON data available for plots.