Hg_chrom1_TN10mRNA_1344
Organism: Heterodera glycines Gene Locus: chr1:13896113-13898694 Feature type: polypeptideProtein Sequence
Length: 354
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.854 | 0.591 | 1.079 | 3.117 | 1.365 | 0.724 | 1.211 | 0.565 | 0.879 | 0.725 | 0.856 | 0.997 | 1.491 | 0.815 | 2.018 | 1.009 | 0.648 | 0.471 | 1.086 | 0.332 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1284
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular
|
— |
KRIR,RKGERVTMNCTEMRRKWE,RRKWEEGEVATKGRRHKKS
|
— | — | — | — | — | — |
0.002
|
— | — |
0.168
|
0.209
|
0.061
|
0.337
|
0.121
|
0.064
|
0.132
|
0.007
|
0.206
|
0.935
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006063
|
1.000
|
1.000
|
Hsc_gene_2563.t1
|
— | — | — |
KAI1723965.1 trypsin inhibitor like cysteine rich domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0003674_0.873|GO:0005488_0.850|GO:0005575_0.632|GO:0110165_0.632|GO:0008150_0.616|GO:0065007_0.575|GO:0009987_0.562|GO:0050789_0.554|GO:0050794_0.541
|
IPR000716+110-195_113-171_138-170_138-199+|IPR036084+264-316+|IPR036857+111-182_128-171+
|
SM00211+138-199+
|
PF00086+113-171+Thyroglobulin_type-1_repeat
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
177-257
|
2.000
|
1-176;258-354
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.823
|
39309.610
|
7.722
|
7.000
|
30.791
|
9.040
|
47.175
|
52.825
|
16.667
|
14.124
|
53.390
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
131.597
|
358.231
|
214.424
|
114.503
|
78.962
|
101.187
|
61.856
|
97.903
|
158.014
|
72.076
|
108.907
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.972
|
-1.783
|
-0.795
|
-0.568
|
— |
-0.699
|
— |
-0.518
|
— | — | — | — | — |
No JSON data available for plots.