Hg_chrom1_TN10mRNA_1346
Organism: Heterodera glycines Gene Locus: chr1:13902263-13904712 Feature type: polypeptideProtein Sequence
Length: 447
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.78 | 0.884 | 1.424 | 0.54 | 1.752 | 0.803 | 0.799 | 1.119 | 1.293 | 1.3 | 0.949 | 1.316 | 1.056 | 0.688 | 1.141 | 0.991 | 0.844 | 0.949 | 0.516 | 0.461 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1286
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
1-Not_Clustered
|
0.708
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— |
KKNQCEHLLELKRKPN
|
— | — | — | — | — | — |
0.000
|
— | — |
0.471
|
0.304
|
0.019
|
0.731
|
0.267
|
0.218
|
0.450
|
0.051
|
0.411
|
0.038
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006065
|
1.000
|
1.000
|
Hsc_gene_2561.t1
|
Hsc_gene_2561.t1
|
— |
Q19775.1 Protein phosphatase ppm-1.A [Caenorhabditis elegans]
|
KAH7696189.1 Protein phosphatase 2C containing protein [Aphelenchus avenae];KAH7730673.1 Protein phosphatase 2C containing protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004722|GO:0006470|GO:0043169
|
GO:0005575_0.879|GO:0110165_0.873|GO:0016020_0.751|GO:0008150_0.733|GO:0005622_0.715|GO:0005737_0.626|GO:0003674_0.611|GO:0009987_0.602|GO:0043226_0.588|GO:0043229_0.569|GO:0043227_0.534
|
IPR000222+57-65+|IPR001932+11-300_22-302_23-295_23-302+|IPR015655+20-300+|IPR036457+1-309_4-304+
|
SM00332+11-300+
|
PF00481+23-295+Protein_phosphatase_2C
|
G3DSA:3.60.40.10:FF:000001+1-306+protein_phosphatase_1B_isoform_X1
|
PTHR47992+20-300+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-8;364-447
|
1.000
|
9-363
|
6b67_C
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.781
|
49956.220
|
4.541
|
-24.000
|
32.438
|
8.277
|
51.454
|
48.546
|
14.094
|
18.345
|
48.546
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
tan
|
1729.475
|
1949.662
|
1795.446
|
1738.606
|
2088.464
|
3237.412
|
3295.998
|
3846.121
|
888.833
|
167.936
|
476.892
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.347
|
-0.302
|
— |
0.233
|
0.647
|
— | — | — |
2.335
|
— |
3.977
|
— | — |
No JSON data available for plots.