Hg_chrom1_TN10mRNA_1347
Organism: Heterodera glycines Gene Locus: chr1:13905542-13906919 Feature type: polypeptideProtein Sequence
Length: 283
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.945 | 1.479 | 0.964 | 0.853 | 0.824 | 0.634 | 0.463 | 1.943 | 0.864 | 2.006 | 0.803 | 1.871 | 1.865 | 0.408 | 0.865 | 1.111 | 0.695 | 1.017 | 1.087 | 0.624 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1287
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
0.995
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
mitochondrion|endoplasmic_reticulum
|
— | — |
5-25
|
0.999
|
— | — | — | — |
0.000
|
— | — |
0.337
|
0.683
|
0.012
|
0.334
|
0.685
|
0.109
|
0.519
|
0.008
|
0.123
|
0.037
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006066
|
1.000
|
1.000
|
Hsc_gene_2560.t1
|
Hsc_gene_2560.t1
|
— |
Q5E9J2.1 Protein CNPPD1 [Bos taurus]
|
KAI1719703.1 cyclin domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000079|GO:0019901
|
— |
IPR013922+34-146_55-175+
|
— |
PF08613+34-146+Cyclin
|
— |
PTHR15615+55-175+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-283
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.573
|
32086.160
|
7.038
|
3.500
|
23.675
|
14.134
|
44.523
|
55.477
|
13.428
|
10.247
|
46.996
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
822.777
|
912.833
|
960.951
|
653.313
|
667.368
|
470.523
|
546.700
|
658.348
|
388.732
|
1481.838
|
1013.364
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.155
|
-0.620
|
-0.448
|
— |
-0.489
|
0.226
|
0.380
|
— | — | — | — | — | — |
No JSON data available for plots.