Hg_chrom1_TN10mRNA_1348
Organism: Heterodera glycines Gene Locus: chr1:13907295-13908451 Feature type: polypeptideProtein Sequence
Length: 258
(Signal peptide: 1-20)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.992 | 1.262 | 0.987 | 0.802 | 0.969 | 0.497 | 0.554 | 0.969 | 1.12 | 1.152 | 1.468 | 1.14 | 1.723 | 0.894 | 0.791 | 1.107 | 0.635 | 1.175 | 2.087 | 0.57 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1288
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
nucleus
|
KKSPNVKKADSKKTK.,KKKEAERRKEQQSAKKNAKESAEKANGQKEVLSDEKKSPNVKKADSKKTK
|
— | — | — | — |
1-20
|
0.985
|
1.000
|
1.000
|
1.000
|
0.140
|
0.200
|
0.017
|
0.182
|
0.963
|
0.317
|
0.446
|
0.012
|
0.185
|
0.021
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006067
|
1.000
|
1.000
|
Hsc_gene_2559.t1
|
Hsc_gene_2559.t1
|
— |
Q0Z7W6.1 Thioredoxin-related transmembrane protein 1 [Bos taurus]
|
KAH7730670.1 DPY-11 protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.871|GO:0110165_0.871|GO:0016020_0.772|GO:0005622_0.745|GO:0008150_0.718|GO:0005737_0.708|GO:0043226_0.700|GO:0043229_0.696|GO:0071944_0.685|GO:0009987_0.672|GO:0043227_0.672|GO:0005886_0.666|GO:0043231_0.646|GO:0005773_0.548|GO:0003674_0.526|GO:0012505_0.526
|
IPR013766+8-128_28-124+|IPR017937+44-62+|IPR036249+24-125+|IPR052454+10-252+
|
— |
PF00085+28-124+Thioredoxin
|
G3DSA:3.40.30.10:FF:000117+26-134+thioredoxin-related_transmembrane_protein_1
|
PTHR46107+10-252+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
214-258
|
1.000
|
1-213
|
1x5e_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.828
|
29114.620
|
8.937
|
8.500
|
26.744
|
12.791
|
45.736
|
54.264
|
15.504
|
11.240
|
50.388
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
lightcyan
|
3379.631
|
2280.846
|
1985.048
|
3012.475
|
6410.783
|
9713.737
|
2785.052
|
3302.163
|
718.031
|
3188.573
|
2129.769
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.430
|
0.264
|
0.711
|
1.057
|
0.616
|
-1.794
|
-1.663
|
— |
-2.267
|
— | — | — | — |