Hg_chrom1_TN10mRNA_1349
Organism: Heterodera glycines Gene Locus: chr1:13908735-13913165 Feature type: polypeptideProtein Sequence
Length: 677
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.876 | 0.79 | 0.94 | 0.764 | 0.788 | 0.682 | 0.967 | 1.182 | 1.379 | 1.277 | 0.649 | 0.695 | 2.134 | 0.966 | 1.628 | 1.118 | 0.702 | 0.918 | 1.25 | 0.652 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1289
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
plastid
|
— |
KTEEG,KKEHLLLVHSKKYLR,RRDEIVFGAAIRRRVP
|
— | — | — | — | — | — |
0.000
|
— | — |
0.482
|
0.315
|
0.520
|
0.367
|
0.429
|
0.116
|
0.270
|
0.107
|
0.253
|
0.235
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003048
|
1.000
|
2.000
|
Hsc_gene_2558.t1;Hsc_gene_2558.t2
|
Hsc_gene_2558.t1;Hsc_gene_2558.t2
|
— |
Q96DB2.1 Histone deacetylase 11 [Homo sapiens]
|
KAI3422231.1 Histone deacetylase 11 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004407
|
GO:0008150_0.933|GO:0005575_0.881|GO:0110165_0.878|GO:0003674_0.858|GO:0009987_0.851|GO:0016020_0.810|GO:0005622_0.752|GO:0043226_0.725|GO:0043229_0.714|GO:0043227_0.681|GO:0043231_0.677|GO:0005488_0.623|GO:0071840_0.576|GO:0016043_0.572|GO:0003824_0.567|GO:0005737_0.563|GO:0005515_0.542|GO:0016787_0.522|GO:0065007_0.516|GO:0005634_0.512|GO:0006325_0.510
|
IPR000286+141-164_175-190_253-263+|IPR008551+476-608+|IPR023696+25-321+|IPR023801+59-319+|IPR037138+27-335+|IPR044150+45-321+|IPR050284+28-322+
|
— |
PF00850+59-319+Histone_deacetylase_domain|PF05742+476-608+Transport_and_Golgi_organisation_2
|
— |
PTHR10625+28-322+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-677
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.871
|
75871.140
|
9.213
|
24.000
|
24.520
|
13.885
|
42.688
|
57.312
|
14.623
|
9.897
|
49.631
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey60
|
1605.235
|
2462.798
|
2283.557
|
1379.913
|
1264.850
|
1074.636
|
1392.421
|
1745.870
|
1622.678
|
1454.378
|
1526.506
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.339
|
-0.973
|
-0.617
|
-0.158
|
-0.220
|
0.385
|
0.595
|
— | — | — | — | — | — |
No JSON data available for plots.