Hg_chrom1_TN10mRNA_135
Organism: Heterodera glycines Gene Locus: chr1:952085-962412 Feature type: polypeptideProtein Sequence
Length: 709
(Signal peptide: 1-25)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.705 | 1.607 | 1.154 | 1.702 | 0.682 | 1.266 | 0.756 | 1.269 | 1.097 | 1.048 | 0.492 | 1.162 | 1.019 | 1.248 | 1.267 | 1.007 | 1.179 | 0.513 | 1.627 | 1.12 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_131
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Female
|
0.995
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
nucleus
|
PRRRRRQAG,KKACFMSVLHWSEARKAER,RRRRRQAGKADGTLRRCTR,RRRRQAGKADGTLRRCTRR
|
— | — | — | — |
1-25
|
0.969
|
0.804
|
0.000
|
0.000
|
0.098
|
0.139
|
0.018
|
0.145
|
0.188
|
0.111
|
0.115
|
0.056
|
0.227
|
0.914
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005583
|
1.000
|
1.000
|
Hsc_gene_20336.t1
|
Hsc_gene_20336.t1
|
— |
P34269.2 Putative tyrosinase-like protein tyr-1 [Caenorhabditis elegans]
|
XP_045097440.1 Protein CBR-TYR-3 [Caenorhabditis briggsae];CAP38652.2 Protein CBR-TYR-3 [Caenorhabditis briggsae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016491
|
GO:0003674_0.906|GO:0008150_0.749|GO:0005575_0.697|GO:0110165_0.696|GO:0005488_0.615|GO:0016020_0.576|GO:0005622_0.561|GO:0003824_0.556|GO:0009987_0.551|GO:0008152_0.524|GO:0043226_0.520
|
IPR002227+208-399_226-243_255-260_360-371_380-398_381-392+|IPR003582+577-615_578-614_624-665_625-664+|IPR008922+174-466_177-458+|IPR050316+155-612+
|
SM00254+577-615_624-665+
|
PF00264+208-399+Common_central_domain_of_tyrosinase
|
— |
PTHR11474+155-612+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
709-709
|
1.000
|
1-708
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.776
|
79942.790
|
6.650
|
2.000
|
22.426
|
12.130
|
48.519
|
51.481
|
11.989
|
10.437
|
54.725
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
blue
|
299.332
|
2.675
|
9.412
|
10.229
|
7.020
|
204.300
|
976.947
|
6.892
|
5.317
|
849.037
|
487.443
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.583
|
1.797
|
— | — |
4.877
|
2.273
|
-5.019
|
7.300
|
-7.428
|
— |
-6.418
|
— | — |