Hg_chrom1_TN10mRNA_1351
Organism: Heterodera glycines Gene Locus: chr1:13915939-13920015 Feature type: polypeptideProtein Sequence
Length: 695
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.77 | 1.539 | 0.942 | 1.191 | 0.935 | 1.181 | 0.839 | 1.727 | 0.991 | 1.011 | 0.61 | 1.016 | 1.439 | 0.941 | 1.028 | 1.274 | 0.967 | 0.894 | 0.885 | 0.804 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1291
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Not_Clustered
|
0.655
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — |
46-80
|
0.955
|
59-79
|
0.989
|
— | — |
0.002
|
— | — |
0.551
|
0.125
|
0.027
|
0.501
|
0.223
|
0.290
|
0.233
|
0.009
|
0.242
|
0.031
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006069
|
1.000
|
1.000
|
Hsc_gene_2555.t1
|
Hsc_gene_2555.t1;Hsc_gene_2555.t2;Hsc_gene_2555.t3
|
— |
D9N129.1 WD repeat-containing protein 20 homolog [Caenorhabditis elegans]
|
KAI1719712.1 putative catabolite repression protein creC [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0003674_0.725|GO:0005575_0.696|GO:0110165_0.687|GO:0008150_0.605|GO:0005622_0.589|GO:0016020_0.582|GO:0009987_0.521|GO:0043226_0.517|GO:0005737_0.516|GO:0043229_0.502
|
IPR001680+191-232_263-303_306-345_313-344_313-354_451-492+|IPR015943+20-531_609-667+|IPR036322+121-517+|IPR051362+16-663+
|
SM00320+191-232_263-303_306-345_451-492+
|
PF00400+313-344+WD_domain,_G-beta_repeat
|
— |
PTHR14107+16-663+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
504-607
|
2.000
|
1-503;608-695
|
6jlq_C
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.756
|
77198.500
|
6.494
|
0.000
|
23.309
|
12.518
|
49.353
|
50.647
|
12.518
|
10.791
|
54.532
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
midnightblue
|
1098.967
|
1460.561
|
1117.423
|
998.569
|
1051.288
|
1063.818
|
2666.995
|
1349.123
|
748.170
|
606.436
|
667.179
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.616
|
-0.686
|
— | — | — |
1.337
|
0.238
|
1.127
|
— | — | — | — | — |
No JSON data available for plots.