Hg_chrom1_TN10mRNA_1353
Organism: Heterodera glycines Gene Locus: chr1:13922259-13924672 Feature type: polypeptideProtein Sequence
Length: 366
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.699 | 1.334 | 1.043 | 0.565 | 1.412 | 0.771 | 0.846 | 0.683 | 1.275 | 1.182 | 1.159 | 2.089 | 1.746 | 0.525 | 0.892 | 1.132 | 0.717 | 1.076 | 0.631 | 0.482 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1293
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-pJ2_J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
KVKK
|
14-39
|
0.983
|
— | — | — | — |
0.000
|
— | — |
0.648
|
0.101
|
0.030
|
0.618
|
0.092
|
0.064
|
0.075
|
0.017
|
0.049
|
0.024
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006070
|
1.000
|
1.000
|
Hsc_gene_2554.t1
|
Hsc_gene_2554.t1
|
— |
Q17820.1 SUMO-activating enzyme subunit aos-1 [Caenorhabditis elegans]
|
KAI1719714.1 thiF family domain-containing protein [Ditylenchus destructor]
|
No
|
-0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008641|GO:0036211
|
GO:0008150_0.865|GO:0005575_0.709|GO:0110165_0.700|GO:0008152_0.641|GO:0044238_0.629|GO:0005622_0.618|GO:0043170_0.612|GO:0003674_0.609|GO:0019538_0.557|GO:0016020_0.544|GO:0043412_0.532|GO:0036211_0.527|GO:0043226_0.520|GO:0043687_0.516|GO:0070647_0.516|GO:0032446_0.515|GO:0043229_0.502
|
IPR000011+33-57_148-175+|IPR000594+12-351+|IPR035985+6-361+|IPR045886+5-353+
|
— |
PF00899+12-351+ThiF_family
|
— |
PTHR10953+5-353+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
177-230
|
2.000
|
1-176;231-366
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.593
|
40999.840
|
5.208
|
-5.500
|
27.596
|
10.109
|
48.634
|
51.366
|
13.388
|
14.208
|
48.361
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
steelblue
|
1880.981
|
1745.672
|
1620.062
|
2605.576
|
2897.473
|
2172.073
|
1523.586
|
1284.189
|
1348.146
|
2024.947
|
1734.889
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.338
|
0.441
|
0.795
|
0.121
|
-0.401
|
-0.503
|
-0.863
|
0.387
|
— | — | — | — | — |
No JSON data available for plots.