Hg_chrom1_TN10mRNA_1354
Organism: Heterodera glycines Gene Locus: chr1:13924707-13928238 Feature type: polypeptideProtein Sequence
Length: 709
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.476 | 0.853 | 0.692 | 1.167 | 0.752 | 0.904 | 0.789 | 1.622 | 1.473 | 1.41 | 0.598 | 1.41 | 1.802 | 0.976 | 1.497 | 1.189 | 0.832 | 1.004 | 1.193 | 0.954 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1294
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
— |
RRRHNQMPTYLSVRKRDKN
|
85-107
|
0.995
|
79-105
|
1.000
|
— | — |
0.000
|
— | — |
0.064
|
0.033
|
0.007
|
0.146
|
0.616
|
0.487
|
0.532
|
0.006
|
0.560
|
0.016
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003049
|
1.000
|
2.000
|
Hsc_gene_2553.t1;Hsc_gene_2553.t2
|
Hsc_gene_2553.t2
|
— |
Q6GMF8.1 Inactive rhomboid protein 1 [Danio rerio]
|
KAF7637294.1 Rhomboid domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004252|GO:0016020
|
GO:0005575_0.919|GO:0110165_0.919|GO:0008150_0.862|GO:0071944_0.848|GO:0016020_0.841|GO:0005886_0.840|GO:0065007_0.752|GO:0050789_0.728|GO:0005622_0.710|GO:0043226_0.700|GO:0009987_0.691|GO:0043227_0.682|GO:0005737_0.679|GO:0005773_0.679|GO:0043229_0.679|GO:0043231_0.679|GO:0012505_0.669|GO:0048519_0.599|GO:0050896_0.578|GO:0050794_0.562
|
IPR022764+503-639+|IPR035952+260-641_481-640+|IPR051512+247-707+
|
— |
PF01694+503-639+Rhomboid_family
|
— |
PTHR45965+247-707+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-2
|
1.000
|
3-709
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.881
|
80936.900
|
8.982
|
32.500
|
22.849
|
14.528
|
43.441
|
56.559
|
14.528
|
8.322
|
46.685
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
darkgrey
|
2088.969
|
3055.200
|
1624.749
|
1427.400
|
1403.310
|
1339.924
|
1400.418
|
1888.615
|
1304.178
|
3608.750
|
2621.077
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.141
|
-1.235
|
— | — | — | — |
0.391
|
-0.290
|
— | — | — | — | — |
No JSON data available for plots.