Hg_chrom1_TN10mRNA_1355
Organism: Heterodera glycines Gene Locus: chr1:13929655-13932129 Feature type: polypeptideProtein Sequence
Length: 448
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.908 | 1.142 | 1.542 | 0.0 | 2.009 | 1.488 | 0.85 | 0.223 | 0.397 | 0.211 | 1.792 | 0.525 | 0.124 | 1.417 | 1.23 | 1.084 | 1.354 | 1.015 | 0.172 | 0.197 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1295
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Not_Clustered
|
0.898
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
QAKVPAKKRGRPPGRR,KRVQSPTDDTTSQRPRRS,KKKKKRVGTASPGKRGRP,KRQKGVRGPKPAQEKGLKR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.982
|
0.021
|
0.026
|
0.162
|
0.016
|
0.016
|
0.022
|
0.011
|
0.028
|
0.035
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006071
|
1.000
|
1.000
|
Hsc_gene_2552.t1
|
Hsc_gene_2552.t1;Hsc_gene_2552.t2;Hsc_gene_2552.t3
|
— | — |
KAI1723983.1 AT hook Transcription Factor family [Ditylenchus destructor]
|
No
|
-0.650
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
full
|
1-448
|
0.000
|
— | — | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.685
|
48875.920
|
4.939
|
-11.000
|
38.839
|
1.786
|
65.402
|
34.598
|
18.304
|
20.536
|
58.259
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
3358.433
|
5352.944
|
3751.753
|
3829.347
|
4419.096
|
3660.436
|
3575.404
|
3697.031
|
3322.773
|
1593.811
|
2334.795
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.742
|
-0.620
|
0.138
|
0.175
|
-0.257
|
— | — | — | — | — | — | — | — |
No JSON data available for plots.