Hg_chrom1_TN10mRNA_1357
Organism: Heterodera glycines Gene Locus: chr1:13934678-13936598 Feature type: polypeptideProtein Sequence
Length: 416
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.727 | 0.615 | 0.787 | 0.746 | 1.122 | 0.555 | 0.83 | 2.043 | 1.015 | 1.332 | 0.947 | 0.848 | 2.07 | 1.294 | 1.226 | 1.202 | 0.67 | 0.947 | 0.74 | 0.778 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1297
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
12-Not_Clustered
|
0.842
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — |
7-27
|
0.988
|
12-42
|
0.993
|
— | — |
0.000
|
— | — |
0.131
|
0.949
|
0.097
|
0.192
|
0.042
|
0.015
|
0.061
|
0.028
|
0.036
|
0.028
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006073
|
1.000
|
1.000
|
Hsc_gene_2550.t1
|
Hsc_gene_2550.t1
|
— | — |
KHN82334.1 RNA pseudouridylate synthase domain-containing protein 3 [Toxocara canis]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0001522|GO:0003723|GO:0009451|GO:0009982
|
— |
IPR020103+75-294+
|
— | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
393-416
|
1.000
|
1-392
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.831
|
46854.800
|
8.403
|
13.500
|
27.404
|
15.144
|
44.712
|
55.288
|
16.346
|
11.058
|
47.837
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
darkgrey
|
986.193
|
985.940
|
1197.913
|
816.157
|
948.832
|
816.575
|
1783.767
|
879.326
|
668.111
|
1027.819
|
873.658
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.410
|
-0.445
|
0.186
|
— |
1.139
|
— |
1.165
|
— | — | — | — | — |
No JSON data available for plots.