Hg_chrom1_TN10mRNA_1358
Organism: Heterodera glycines Gene Locus: chr1:13937334-13939050 Feature type: polypeptideProtein Sequence
Length: 272
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.898 | 0.94 | 0.334 | 0.761 | 0.49 | 0.943 | 0.788 | 0.919 | 1.879 | 1.441 | 0.279 | 3.46 | 2.349 | 0.848 | 0.6 | 0.893 | 0.844 | 1.448 | 0.566 | 1.406 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1298
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
15-Male
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
golgi_apparatus
|
— | — |
53-73
|
0.991
|
— | — | — | — |
0.000
|
— | — |
0.136
|
0.109
|
0.047
|
0.139
|
0.537
|
0.489
|
0.680
|
0.007
|
0.393
|
0.059
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006074
|
1.000
|
1.000
|
Hsc_gene_2549.t1
|
Hsc_gene_2549.t1
|
— |
Q9BWQ8.1 Protein lifeguard 2 [Homo sapiens]
|
KAI3422221.1 Pfam:UPF0005 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.915|GO:0005575_0.780|GO:0110165_0.780|GO:0009987_0.776|GO:0016020_0.771|GO:0065007_0.718|GO:0050789_0.698|GO:0005886_0.693|GO:0071944_0.693|GO:0050896_0.612|GO:0051716_0.582|GO:0050794_0.575|GO:0005622_0.568|GO:0005737_0.568|GO:0005773_0.568|GO:0043226_0.568|GO:0043227_0.568|GO:0043229_0.568|GO:0043231_0.568|GO:0012505_0.539|GO:0023052_0.530|GO:0007154_0.527|GO:0008219_0.516|GO:0012501_0.516|GO:0006915_0.514|GO:0007165_0.512
|
IPR006214+32-269_58-268+
|
— |
PF01027+58-268+Inhibitor_of_apoptosis-promoting_Bax1
|
— |
PTHR23291+32-269+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-272
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.666
|
30378.120
|
7.273
|
2.500
|
11.397
|
15.809
|
30.515
|
69.485
|
6.618
|
4.779
|
47.794
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
2935.953
|
2728.934
|
2896.258
|
2378.164
|
2817.055
|
3546.557
|
3662.561
|
5695.325
|
2102.365
|
2371.202
|
2255.986
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.142
|
-0.336
|
-0.177
|
0.212
|
0.347
|
— |
0.580
|
-0.494
|
— | — | — | — | — |
No JSON data available for plots.