Hg_chrom1_TN10mRNA_136
Organism: Heterodera glycines Gene Locus: chr1:981418-990641 Feature type: polypeptideProtein Sequence
Length: 532
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.634 | 1.093 | 0.615 | 0.843 | 0.815 | 0.771 | 0.403 | 1.128 | 1.17 | 1.473 | 0.883 | 0.885 | 1.305 | 0.759 | 1.036 | 0.806 | 3.205 | 0.57 | 1.446 | 0.719 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_132
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
3.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-Not_Clustered
|
0.776
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— | — |
32-58
|
0.985
|
— | — | — | — |
0.000
|
— | — |
0.163
|
0.050
|
0.045
|
0.106
|
0.233
|
0.151
|
0.197
|
0.042
|
0.614
|
0.085
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000715
|
1.000
|
5.000
|
Hsc_gene_15584.t1;Hsc_gene_15584.t2;Hsc_gene_20333.t1;Hsc_gene_20335.t1;Hsc_gene_20335.t2
|
Hsc_gene_20332.t1;Hsc_gene_20333.t1;Hsc_gene_20335.t2
|
— |
Q5FC78.2 Probable G-protein coupled receptor F27E5.8 [Caenorhabditis elegans]
|
KAI3415663.1 hypothetical protein GPALN_005256 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0007606|GO:0016020
|
— |
IPR004151+13-193+|IPR052854+12-254+
|
— |
PF03125+13-193+Sre_G_protein-coupled_chemoreceptor
|
— |
PTHR47518+12-254+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
391-532
|
1.000
|
1-390
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.712
|
60207.940
|
9.198
|
20.000
|
21.429
|
11.278
|
54.323
|
45.677
|
13.158
|
8.271
|
52.256
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
blue
|
957.652
|
5.584
|
56.173
|
46.649
|
20.318
|
36.658
|
40.259
|
32.696
|
4.838
|
4096.721
|
2343.056
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.095
|
2.924
|
— |
-1.234
|
0.867
|
— | — | — |
-7.843
|
— |
-7.061
|
— |
-5.036
|
No JSON data available for plots.