SCN Proteipedia

Hg_chrom1_TN10mRNA_1360

Organism: Heterodera glycines Gene Locus: chr1:13945126-13947653 Feature type: polypeptide

Protein Sequence

Length: 595

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.192	1.055	0.519	0.927	0.616	2.155	1.02	1.429	0.56	1.022	0.688	2.274	0.934	1.519	0.686	1.705	0.771	0.407	0.388	0.939	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom1_TN10gene_1300	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	10-Pre_planta	0.998

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	GKEKKRAKGPEKPK,RRQKRFKLAHKEKEPNRRK,KRFKLAHKEKEPNRRKSKG	—	—	14-64	0.988	—	—	0.000	—	—	0.877	0.145	0.004	0.328	0.027	0.059	0.042	0.003	0.054	0.020

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0001714	1.000	3.000	Hsc_gene_2547.t1;Hsc_gene_2547.t2;Hsc_gene_2547.t3	Hsc_gene_2547.t1;Hsc_gene_2547.t2;Hsc_gene_2547.t3	—	Q17381.1 Defective pharyngeal development protein 4 [Caenorhabditis elegans]	KAI3422219.1 Hepatocyte nuclear factor 3-beta [Globodera pallida]	No	-0.530

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003700\|GO:0006355\|GO:0043565	GO:0008150_0.937\|GO:0009987_0.849\|GO:0065007_0.801\|GO:0050789_0.796\|GO:0050794_0.793\|GO:0003674_0.790\|GO:0005488_0.790\|GO:0003676_0.740\|GO:0097159_0.740\|GO:0005575_0.738\|GO:0110165_0.734\|GO:0032502_0.713\|GO:0008152_0.712\|GO:0019222_0.712\|GO:0044238_0.712\|GO:0080090_0.712\|GO:0032501_0.711\|GO:0031323_0.710\|GO:0044237_0.710\|GO:0048856_0.696\|GO:0043170_0.694\|GO:0060255_0.694\|GO:0009058_0.685\|GO:0009889_0.685\|GO:0031326_0.685\|GO:0044249_0.685\|GO:0003677_0.684\|GO:0009059_0.683\|GO:0010556_0.683\|GO:0010467_0.680\|GO:0005622_0.678\|GO:0006139_0.678\|GO:0010468_0.678\|GO:0016070_0.678\|GO:0019219_0.678\|GO:0051252_0.678\|GO:0090304_0.678\|GO:0043565_0.674\|GO:0032774_0.672\|GO:0034654_0.672\|GO:0141187_0.672\|GO:0006351_0.662\|GO:0006355_0.662\|GO:2001141_0.662\|GO:0007275_0.661\|GO:0043226_0.656\|GO:0043229_0.648\|GO:0016020_0.632\|GO:0048518_0.566\|GO:0043227_0.560\|GO:0043231_0.552\|GO:0048731_0.549\|GO:0003690_0.544\|GO:0048522_0.541\|GO:1990837_0.528\|GO:0005634_0.509\|GO:0006357_0.504\|GO:0006366_0.504\|GO:0009893_0.502\|GO:0031325_0.501	IPR001766+190-282_191-279_192-205_192-288_213-230_238-255+\|IPR018122+192-205+\|IPR030456+238-244+\|IPR036388+179-289+\|IPR036390+191-288+\|IPR050211+190-591+	SM00339+190-282+	PF00250+191-279+Forkhead_domain	G3DSA:1.10.10.10:FF:000042+178-289+hepatocyte_nuclear_factor_3-beta	PTHR11829+190-591+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	93-188;346-476	3.000	1-92;189-345;477-595	8vg2_O	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.963	63687.530	8.378	16.500	17.311	9.916	46.891	53.109	10.756	6.555	56.134

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	yellow	1071.906	1877.123	1583.205	1100.582	414.324	349.553	504.181	951.762	2129.185	549.925	1226.751

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.475	-0.907	-0.416	-1.441	-0.231	0.539	1.341	-0.774	1.831	—	—	—	—

No JSON data available for plots.

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