Hg_chrom1_TN10mRNA_1362
Organism: Heterodera glycines Gene Locus: chr1:13956401-13958738 Feature type: polypeptideProtein Sequence
Length: 508
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.893 | 0.549 | 0.752 | 0.95 | 0.919 | 1.009 | 0.609 | 1.476 | 1.225 | 1.756 | 1.193 | 0.695 | 1.695 | 0.757 | 1.326 | 1.125 | 0.549 | 1.104 | 0.909 | 0.521 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1302
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
GKKGRPSSRLKALQRGPKKRE
|
— | — | — | — | — | — |
0.000
|
— | — |
0.861
|
0.090
|
0.037
|
0.191
|
0.027
|
0.031
|
0.050
|
0.017
|
0.025
|
0.061
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003050
|
2.000
|
1.000
|
Hsc_gene_2544.t1
|
Hsc_gene_2544.t1
|
— |
A8WTM7.1 Nucleolar complex protein 2 homolog [Caenorhabditis briggsae]
|
KAH7727369.1 nucleolar complex protein [Aphelenchus avenae]
|
No
|
-0.070
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.916|GO:0110165_0.913|GO:0016020_0.853|GO:0005622_0.847|GO:0043226_0.784|GO:0043229_0.774|GO:0043227_0.735|GO:0043231_0.735|GO:0003674_0.701|GO:0008150_0.631|GO:0005488_0.601|GO:0043228_0.595|GO:0043232_0.595|GO:0005634_0.587|GO:0009987_0.587|GO:0031974_0.571|GO:0043233_0.571|GO:0070013_0.571|GO:0031981_0.564|GO:0005730_0.546|GO:0005737_0.525
|
IPR005343+68-500_240-500+|IPR016024+175-258+
|
— |
PF03715+240-500+Noc2p_family
|
— |
PTHR12687+68-500+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-1
|
1.000
|
2-508
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.680
|
57404.240
|
9.993
|
31.500
|
26.969
|
12.008
|
44.488
|
55.512
|
17.323
|
9.646
|
44.488
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.