SCN Proteipedia

Hg_chrom1_TN10mRNA_1366

Organism: Heterodera glycines Gene Locus: chr1:13967463-13974125 Feature type: polypeptide

Protein Sequence

Length: 1,804

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.683	0.98	1.018	0.44	0.952	1.066	0.706	1.136	1.404	1.056	0.907	1.467	0.77	1.546	0.996	1.465	1.054	0.806	0.64	1.125	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom1_TN10gene_1306	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	14-Not_described	0.985

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	GRPLKSIKSRLKGKEGRIRG	—	—	—	—	—	—	0.000	—	—	0.701	0.122	0.065	0.358	0.096	0.118	0.032	0.032	0.183	0.075

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0003051	2.000	1.000	Hsc_gene_2541.t1	Hsc_gene_2541.t1	—	P35074.2 DNA-directed RNA polymerase II subunit RPB1 [Caenorhabditis briggsae]	KAI3422210.1 meiosis-specific APC/C activator protein ama1 [Globodera pallida]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003677\|GO:0003899\|GO:0006351\|GO:0006366	GO:0005575_0.960\|GO:0110165_0.906\|GO:0005622_0.839\|GO:0016020_0.829\|GO:0043226_0.806\|GO:0043229_0.785\|GO:0008150_0.731\|GO:0043227_0.710\|GO:0009987_0.700\|GO:0043231_0.699\|GO:0005634_0.649\|GO:0003674_0.609\|GO:0008152_0.567\|GO:0043170_0.567\|GO:0044238_0.539\|GO:0009058_0.537\|GO:0006139_0.533\|GO:0034654_0.533\|GO:0044237_0.533\|GO:0009059_0.530\|GO:0044249_0.530\|GO:0016070_0.524\|GO:0090304_0.524\|GO:0141187_0.522\|GO:0032774_0.517	IPR000684+1542-1553_1549-1560_1556-1567_1561-1574_1575-1588_1589-1602_1602-1608_1603-1616_1609-1615_1616-1622_1617-1630_1631-1644_1637-1643_1644-1650_1645-1658_1651-1657_1659-1672_1673-1686_1687-1700_1701-1714_1715-1728_1729-1742_1743-1756_1757-1770_1771-1784+\|IPR000722+347-511+\|IPR006592+237-540+\|IPR007066+515-683+\|IPR007073+1155-1288+\|IPR007075+887-1070+\|IPR007080+13-345+\|IPR007081+821-1414+\|IPR007083+709-814+\|IPR038120+682-800+\|IPR038593+1155-1289+\|IPR042102+520-677+\|IPR044893+7-126_251-310+\|IPR045867+13-1470+	SM00663+237-540+	PF00623+347-511+RNA_polymerase_Rpb1,_domain_2\|PF04983+515-683+RNA_polymerase_Rpb1,_domain_3\|PF04990+1155-1288+RNA_polymerase_Rpb1,_domain_7\|PF04992+887-1070+RNA_polymerase_Rpb1,_domain_6\|PF04997+13-345+RNA_polymerase_Rpb1,_domain_1\|PF04998+821-1414+RNA_polymerase_Rpb1,_domain_5\|PF05000+709-814+RNA_polymerase_Rpb1,_domain_4\|PF05001+1542-1553_1549-1560_1556-1567_1561-1574_1575-1588_1589-1602_1603-1616_1617-1630_1631-1644_1645-1658_1659-1672_1673-1686_1687-1700_1701-1714_1715-1728_1729-1742_1743-1756_1757-1770_1771-1784+RNA_polymerase_Rpb1_C-terminal_repeat	G3DSA:1.10.132.30:FF:000001+685-800+DNA-directed_RNA_polymerase_subunit\|G3DSA:1.10.150.390:FF:000001+1415-1459+DNA-directed_RNA_polymerase_subunit\|G3DSA:1.10.274.100:FF:000001+520-677+DNA-directed_RNA_polymerase_subunit\|G3DSA:2.40.40.20:FF:000019+431-519+DNA-directed_RNA_polymerase_II_subunit_RPB1\|G3DSA:3.30.1360.140:FF:000001+1155-1289+DNA-directed_RNA_polymerase_subunit\|G3DSA:3.30.1490.180:FF:000001+380-439+DNA-directed_RNA_polymerase_subunit\|G3DSA:4.10.860.120:FF:000005+6-125+DNA-directed_RNA_polymerase_subunit	PTHR19376+13-1470+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1494-1804	1.000	1-1493	8rbo_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.844	200050.530	7.054	12.500	24.446	9.701	49.501	50.499	13.137	11.308	52.938

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	grey60	1644.893	1998.417	1438.417	1594.633	1659.131	1292.885	2017.068	1352.001	1830.607	1566.244	1679.543

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.704	-0.463	0.258	—	-0.345	0.652	—	0.719	—	—	—	—	—

No JSON data available for plots.

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