Hg_chrom1_TN10mRNA_1368
Organism: Heterodera glycines Gene Locus: chr1:13976645-13981174 Feature type: polypeptideProtein Sequence
Length: 600
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.756 | 1.008 | 1.242 | 0.115 | 1.833 | 1.111 | 0.476 | 0.583 | 0.926 | 0.788 | 1.793 | 1.765 | 0.926 | 0.609 | 1.429 | 1.619 | 0.71 | 0.884 | 0.128 | 0.441 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1308
|
— | — |
1.111
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KKKR,KRQK,KRRNKIQAEEKRKKET,KRLEQREIMKTREKIKKKL,KKADGEVSARQKKRKRKMS,KKKAMADLLSKRRNKIQAEEKRKK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.933
|
0.057
|
0.011
|
0.261
|
0.050
|
0.013
|
0.047
|
0.003
|
0.059
|
0.021
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003052
|
2.000
|
1.000
|
Hsc_gene_2538.t1
|
Hsc_gene_2538.t1;Hsc_gene_2538.t2;Hsc_gene_2538.t3
|
— |
A2AQ19.1 RNA polymerase-associated protein RTF1 homolog [Mus musculus]
|
KAF7637307.1 Plus3 domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003677
|
GO:0005575_0.957|GO:0110165_0.954|GO:0005622_0.932|GO:0043226_0.905|GO:0016020_0.902|GO:0043229_0.890|GO:0043227_0.835|GO:0043231_0.805|GO:0005634_0.755|GO:0008150_0.708|GO:0009987_0.675|GO:0008152_0.552|GO:0043170_0.552|GO:0009058_0.534|GO:0009059_0.534|GO:0010467_0.534|GO:0044237_0.534|GO:0044249_0.534|GO:0006139_0.526|GO:0044238_0.526|GO:0090304_0.524|GO:0034654_0.513|GO:0141187_0.513
|
IPR004343+235-350_235-373_241-348+|IPR036128+233-371_237-372+
|
SM00719+235-350+
|
PF03126+241-348+Plus-3_domain
|
— |
PTHR13115+12-597+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-238;414-600
|
1.000
|
239-413
|
9s3g_R
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.772
|
68138.460
|
9.283
|
9.500
|
37.833
|
6.167
|
62.167
|
37.833
|
20.000
|
17.833
|
46.667
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
1447.753
|
2316.862
|
1258.781
|
1116.807
|
1134.136
|
1085.795
|
1150.490
|
1387.520
|
1840.749
|
1409.458
|
1594.297
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.110
|
-1.190
|
— | — | — | — |
0.249
|
— | — | — | — | — | — |
No JSON data available for plots.