SCN Proteipedia

Hg_chrom1_TN10mRNA_1370

Organism: Heterodera glycines Gene Locus: chr1:13983828-13987285 Feature type: polypeptide

Protein Sequence

Length: 610

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.667	1.334	0.864	0.396	1.284	1.093	0.683	1.23	1.202	1.152	1.043	1.446	0.956	1.293	1.104	1.452	0.672	0.869	0.631	0.82	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom1_TN10gene_1310	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	16-Not_Clustered	0.490

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm\|cell_membrane	—	RRRR,KKCKKSKPFGGKKKDKDR	—	—	29-49	0.997	—	—	0.000	—	—	0.344	0.161	0.009	0.693	0.248	0.235	0.198	0.009	0.570	0.035

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0003053	2.000	1.000	Hsc_gene_2537.t1	Hsc_gene_2537.t1	—	Q17850.2 Serine/threonine-protein kinase pak-1 [Caenorhabditis elegans]	KAI3422209.1 p21 protein (Cdc42 Rac)-activated kinase [Globodera pallida]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004672\|GO:0004674\|GO:0005524\|GO:0006468	GO:0008150_0.983\|GO:0009987_0.924\|GO:0005575_0.880\|GO:0110165_0.874\|GO:0003674_0.839\|GO:0003824_0.839\|GO:0140096_0.839\|GO:0016740_0.836\|GO:0016772_0.836\|GO:0004672_0.835\|GO:0016301_0.835\|GO:0016773_0.835\|GO:0065007_0.820\|GO:0050789_0.816\|GO:0005622_0.805\|GO:0050794_0.805\|GO:0071840_0.759\|GO:0016043_0.757\|GO:0050896_0.756\|GO:0051716_0.668\|GO:0004674_0.659\|GO:0005737_0.646\|GO:0048518_0.620\|GO:0016020_0.618\|GO:0032502_0.614\|GO:0032501_0.612\|GO:0048856_0.611\|GO:0043226_0.589\|GO:0007154_0.564\|GO:0023052_0.563\|GO:0007165_0.548\|GO:0048522_0.533\|GO:0071944_0.528\|GO:0007275_0.527\|GO:0043229_0.514	IPR000095+89-102_89-124_89-144+\|IPR000719+334-585+\|IPR008271+449-461+\|IPR011009+325-588+\|IPR017441+340-363+\|IPR033923+87-132+\|IPR036936+84-161+\|IPR050285+83-604+	SM00220+334-585+\|SM00285+89-124+	PF00069+334-585+Protein_kinase_domain\|PF00786+89-144+P21-Rho-binding_domain	G3DSA:1.10.510.10:FF:000011+411-609+Non-specific_serine/threonine_protein_kinase\|G3DSA:3.30.200.20:FF:000705+296-410+Non-specific_serine/threonine_protein_kinase\|G3DSA:3.90.810.10:FF:000005+87-159+Non-specific_serine/threonine_protein_kinase	PTHR48015+83-604+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-305	1.000	306-610	4zlo_B	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.854	68310.310	7.345	6.500	27.213	9.508	51.475	48.525	14.754	12.459	49.836

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	greenyellow	668.749	641.463	337.994	353.925	385.772	432.784	770.388	815.242	258.433	1330.362	870.964

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.154	-0.995	0.175	—	—	0.843	0.817	—	-2.473	—	—	—	—

No JSON data available for plots.

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