SCN Proteipedia

Hg_chrom1_TN10mRNA_1375

Organism: Heterodera glycines Gene Locus: chr1:13997538-13999940 Feature type: polypeptide

Protein Sequence

Length: 489

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.927	0.999	1.19	0.635	1.125	1.101	0.803	0.92	1.227	1.299	1.146	1.323	0.852	0.787	0.793	1.169	0.771	1.022	1.101	0.782	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom1_TN10gene_1315	—	—	1.111	1.000	1.000	2.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	19-Eggs_Female	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal\|nuclear_export_signal	cytoplasm	—	KRPTASELLKYSFFKKAKD	—	—	—	—	—	—	0.000	—	—	0.475	0.161	0.012	0.666	0.161	0.249	0.230	0.017	0.373	0.042

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0001716	3.000	1.000	Hsc_gene_2533.t1	Hsc_gene_2533.t1	—	G5EEN4.1 Germinal center kinase 3 [Caenorhabditis elegans]	KAI3422204.1 Germinal center kinase 3 [Globodera pallida]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004672\|GO:0004674\|GO:0005524\|GO:0006468	GO:0008150_0.923\|GO:0009987_0.865\|GO:0005575_0.838\|GO:0110165_0.828\|GO:0065007_0.817\|GO:0050789_0.801\|GO:0005622_0.783\|GO:0003674_0.780\|GO:0050794_0.772\|GO:0003824_0.746\|GO:0016740_0.725\|GO:0050896_0.715\|GO:0140096_0.698\|GO:0016772_0.684\|GO:0016301_0.661\|GO:0016773_0.650\|GO:0005737_0.637\|GO:0004672_0.625\|GO:0051716_0.622\|GO:0008152_0.594\|GO:0007154_0.588\|GO:0044237_0.581\|GO:0023052_0.577\|GO:0043170_0.569\|GO:0007165_0.561\|GO:0016020_0.560\|GO:0004674_0.527\|GO:0044238_0.523\|GO:0048518_0.521\|GO:0019538_0.516\|GO:0035556_0.509\|GO:0006793_0.508\|GO:0006796_0.508\|GO:0048522_0.504	IPR000719+21-299+\|IPR011009+14-310+\|IPR017441+27-50+\|IPR024678+392-449+\|IPR050629+13-381+	SM00220+21-299+	PF00069+21-299+Protein_kinase_domain\|PF12202+392-449+Oxidative-stress-responsive_kinase_1_C-terminal_domain	G3DSA:1.10.510.10:FF:000068+100-315+STE20/SPS1-related_proline-alanine-rich_protein_kinase\|G3DSA:3.30.200.20:FF:000114+8-98+serine/threonine-protein_kinase_OSR1_isoform_X1	PTHR48012+13-381+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	323-403	2.000	1-322;404-489	5d9h_B	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.611	54047.490	5.710	-4.500	26.585	8.998	48.057	51.943	13.292	13.292	51.125

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	turquoise	2328.710	3016.787	1702.658	1978.619	2290.215	2479.784	3420.795	2373.983	821.366	3098.516	2122.595

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.054	-0.746	0.325	0.179	—	0.475	—	0.669	—	—	—	—	—

No JSON data available for plots.

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