Hg_chrom1_TN10mRNA_1378
Organism: Heterodera glycines Gene Locus: chr1:14006848-14009054 Feature type: polypeptideProtein Sequence
Length: 276
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.095 | 1.264 | 1.054 | 0.5 | 1.208 | 0.743 | 0.431 | 1.63 | 1.288 | 1.126 | 1.757 | 1.279 | 1.308 | 0.766 | 0.961 | 0.673 | 0.594 | 0.878 | 0.836 | 1.279 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1318
|
— | — |
1.111
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-pJ2_J3_J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— |
KKVLKMHAKNKYDRKAKA,KKPDWYQETVHRLEKTLKK
|
— | — | — | — | — | — |
0.083
|
— | — |
0.174
|
0.937
|
0.108
|
0.306
|
0.039
|
0.036
|
0.038
|
0.058
|
0.042
|
0.086
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003056
|
2.000
|
1.000
|
Hsc_gene_2530.t1
|
Hsc_gene_2530.t1
|
— | — |
KAF7637317.1 TPR_REGION domain-containing protein [Meloidogyne graminicola]
|
No
|
-0.020
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.904|GO:0110165_0.899|GO:0005622_0.871|GO:0043226_0.823|GO:0043229_0.817|GO:0016020_0.566|GO:0005737_0.552|GO:0043227_0.524|GO:0003674_0.503|GO:0043231_0.501
|
IPR011990+41-253_112-265+|IPR019734+177-210_179-209_212-245+
|
SM00028+177-210_212-245+
|
PF13181+179-209+Tetratricopeptide_repeat
|
— |
PTHR16056+76-259+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-276
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.721
|
31803.640
|
9.549
|
13.500
|
32.609
|
13.406
|
49.275
|
50.725
|
19.565
|
13.043
|
43.841
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
3438.251
|
1011.108
|
3057.352
|
3523.343
|
5023.690
|
5080.956
|
3175.649
|
4071.677
|
3952.974
|
2723.702
|
3250.533
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.368
|
1.664
|
0.313
|
0.480
|
— |
-0.667
|
-0.425
|
— | — | — | — | — | — |
No JSON data available for plots.