Hg_chrom1_TN10mRNA_1382
Organism: Heterodera glycines Gene Locus: chr1:14019127-14021200 Feature type: polypeptideProtein Sequence
Length: 409
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.881 | 0.91 | 0.756 | 0.506 | 1.059 | 0.564 | 1.019 | 0.733 | 1.25 | 1.123 | 1.074 | 1.294 | 1.29 | 0.846 | 1.198 | 1.048 | 1.042 | 1.482 | 0.188 | 0.719 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1322
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Not_Clustered
|
0.853
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— |
KRRR
|
1-25
|
0.972
|
— | — | — | — |
0.000
|
— | — |
0.085
|
0.948
|
0.008
|
0.135
|
0.082
|
0.061
|
0.078
|
0.021
|
0.025
|
0.050
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001719
|
3.000
|
1.000
|
Hsc_gene_2527.t1
|
Hsc_gene_2527.t1
|
— |
P48728.1 Aminomethyltransferase, mitochondrial [Homo sapiens]
|
KAI1720476.1 aminomethyltransferase folate-binding domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004047|GO:0005515|GO:0005960|GO:0006546
|
GO:0005575_0.818|GO:0110165_0.754|GO:0005622_0.676|GO:0016020_0.640|GO:0043226_0.630|GO:0005737_0.627|GO:0043229_0.617|GO:0008150_0.573|GO:0043227_0.573|GO:0043231_0.569|GO:0003674_0.550
|
IPR006222+27-282+|IPR006223+23-394+|IPR013977+311-393+|IPR027266+24-260+|IPR028896+22-398+|IPR029043+303-397+
|
— |
PF01571+27-282+Aminomethyltransferase_folate-binding_domain|PF08669+311-393+Glycine_cleavage_T-protein_C-terminal_barrel_domain
|
G3DSA:3.30.70.1400:FF:000001+72-163+Aminomethyltransferase
|
PTHR43757+22-398+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-409
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.871
|
44617.480
|
9.518
|
13.000
|
24.939
|
8.802
|
44.743
|
55.257
|
14.425
|
10.513
|
53.545
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
darkgrey
|
1620.308
|
1852.237
|
1120.198
|
992.633
|
1086.580
|
979.832
|
1377.465
|
1338.744
|
734.114
|
3257.879
|
2176.265
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.955
|
-1.037
|
— | — | — |
0.502
|
0.347
|
— |
-2.275
|
— | — | — | — |
No JSON data available for plots.