Hg_chrom1_TN10mRNA_1387
Organism: Heterodera glycines Gene Locus: chr1:14030506-14033393 Feature type: polypeptideProtein Sequence
Length: 625
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.726 | 0.856 | 0.727 | 0.883 | 1.013 | 0.533 | 0.781 | 1.2 | 1.067 | 1.514 | 0.679 | 1.224 | 1.644 | 1.138 | 1.502 | 1.92 | 0.656 | 0.824 | 0.369 | 0.376 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1326
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
9-Migratory
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — | — | — |
14-70
|
0.990
|
— | — |
0.000
|
— | — |
0.067
|
0.758
|
0.095
|
0.232
|
0.154
|
0.060
|
0.093
|
0.036
|
0.042
|
0.052
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006084
|
1.000
|
1.000
|
Hsc_gene_2523.t1
|
Hsc_gene_2522.t1;Hsc_gene_2523.t1
|
— |
Q20624.3 Molybdenum cofactor biosynthesis protein moc-5 [Caenorhabditis elegans]
|
KAH7730689.1 molybdopterin cofactor synthesis protein a [Aphelenchus avenae]
|
No
|
-0.090
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003824|GO:0006777|GO:0046872|GO:0051536|GO:0051539
|
GO:0008150_0.799|GO:0005575_0.676|GO:0110165_0.639|GO:0009987_0.583|GO:0003674_0.548
|
IPR000385+72-83+|IPR002820+464-600+|IPR006638+66-267+|IPR007197+55-346_60-284_71-232+|IPR010505+239-345_306-344+|IPR013483+57-345+|IPR013785+54-363+|IPR036522+449-609_460-603+|IPR050105+50-348+
|
SM00729+66-267+
|
PF01967+464-600+MoaC_family|PF04055+71-232+Radical_SAM_superfamily|PF06463+239-345+Molybdenum_Cofactor_Synthesis_C
|
— |
PTHR22960+50-348+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
600-625
|
1.000
|
1-599
|
4fdf_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.938
|
68820.790
|
8.682
|
18.500
|
24.320
|
10.080
|
47.520
|
52.480
|
14.240
|
10.080
|
51.840
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
3081.288
|
2671.999
|
6739.869
|
3344.670
|
3146.766
|
2183.429
|
3053.467
|
6717.359
|
1534.076
|
1883.492
|
1733.742
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.105
|
0.187
|
-0.902
|
-0.120
|
-0.514
|
0.495
|
1.517
|
-0.994
|
— | — | — | — | — |
No JSON data available for plots.