Hg_chrom1_TN10mRNA_1388
Organism: Heterodera glycines Gene Locus: chr1:14037266-14043673 Feature type: polypeptideProtein Sequence
Length: 1,256
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.768 | 1.111 | 0.738 | 0.631 | 1.327 | 1.347 | 0.55 | 1.513 | 1.097 | 1.592 | 0.929 | 1.077 | 1.614 | 1.194 | 1.3 | 0.921 | 0.679 | 0.7 | 0.796 | 0.749 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1327
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
12-ppJ2_pJ2_J3_Females
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
endoplasmic_reticulum
|
— |
KRRP,RRFIQQIEAEESLKTKRN,REKKAAQKVKEEEKKRTEEKGRKVRTEK
|
— | — | — | — | — | — |
0.001
|
— | — |
0.117
|
0.103
|
0.029
|
0.245
|
0.470
|
0.248
|
0.441
|
0.036
|
0.246
|
0.425
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006085
|
1.000
|
1.000
|
Hsc_gene_2521.t1
|
Hsc_gene_2520.t1;Hsc_gene_2521.t1
|
— |
E9PVB5.1 Tetratricopeptide repeat protein 17 [Mus musculus]
|
KAI1719657.1 tetratricopeptide repeat protein 17 [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.747|GO:0110165_0.747|GO:0008150_0.742|GO:0009987_0.698|GO:0005622_0.684|GO:0005737_0.571|GO:0071840_0.550|GO:0016043_0.542|GO:0016020_0.504
|
IPR011990+170-414_224-364_663-1238_1086-1250+|IPR019734+264-297_298-331_739-772_1132-1165_1202-1235+|IPR052630+9-1249+
|
SM00028+264-297_298-331_739-772_1132-1165_1202-1235+
|
— | — |
PTHR16091+9-1249+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
444-494
|
2.000
|
1-443;495-1256
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.720
|
144061.240
|
8.038
|
25.000
|
27.548
|
12.420
|
48.169
|
51.831
|
15.525
|
12.022
|
43.312
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
red
|
2572.464
|
2321.595
|
3558.117
|
2569.740
|
2317.823
|
2229.268
|
3388.905
|
2412.775
|
1236.759
|
3277.626
|
2402.969
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.387
|
— |
-0.361
|
-0.181
|
— |
0.614
|
— |
0.633
|
— | — | — | — | — |
No JSON data available for plots.