Hg_chrom1_TN10mRNA_1391
Organism: Heterodera glycines Gene Locus: chr1:14050058-14052556 Feature type: polypeptideProtein Sequence
Length: 218
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.213 | 1.067 | 1.501 | 0.475 | 1.07 | 1.176 | 0.765 | 0.688 | 1.121 | 1.674 | 1.043 | 2.698 | 2.166 | 0.529 | 1.03 | 0.983 | 0.677 | 0.973 | 1.059 | 0.54 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1330
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
endoplasmic_reticulum
|
— | — | — | — |
7-35
|
0.813
|
— | — |
0.000
|
— | — |
0.244
|
0.299
|
0.079
|
0.427
|
0.564
|
0.407
|
0.504
|
0.116
|
0.534
|
0.262
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006088
|
1.000
|
1.000
|
Hsc_gene_2517.t1
|
Hsc_gene_2517.t1
|
F55C10.1a
|
G5EDN6.1 Protein phosphatase 2B regulatory subunit cnb-1 [Caenorhabditis elegans]
|
KAI3422188.1 Calcineurin subunit B [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005509|GO:0008597
|
GO:0008150_0.775|GO:0005575_0.763|GO:0110165_0.746|GO:0005622_0.679|GO:0003674_0.643|GO:0005737_0.612|GO:0016020_0.569|GO:0009987_0.548|GO:0005488_0.529
|
IPR002048+53-81_53-110_81-116_85-113_118-153_122-150_122-188_159-194_163-191+|IPR011992+41-196+|IPR015757+31-200+|IPR018247+94-106_131-143_172-184+
|
SM00054+53-81_85-113_122-150_163-191+
|
PF13499+53-110_122-188+EF-hand_domain_pair
|
G3DSA:1.10.238.10:FF:000047+33-201+Calcineurin_subunit_B_type_1
|
PTHR45942+31-200+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-218
|
9b9g_J
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.554
|
25276.130
|
4.974
|
-4.500
|
27.982
|
12.385
|
48.165
|
51.835
|
13.303
|
14.679
|
42.661
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
tan
|
699.787
|
1730.343
|
1290.647
|
810.816
|
503.430
|
634.979
|
403.906
|
1275.969
|
624.520
|
99.396
|
324.449
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.653
|
-1.231
|
-0.562
|
-0.719
|
0.349
|
-0.644
|
0.906
|
-1.520
|
— | — | — | — | — |
No JSON data available for plots.