Hg_chrom1_TN10mRNA_1392
Organism: Heterodera glycines Gene Locus: chr1:14053403-14069823 Feature type: polypeptideProtein Sequence
Length: 3,850
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.114 | 0.725 | 0.86 | 0.412 | 2.173 | 1.678 | 0.615 | 1.273 | 0.854 | 1.555 | 0.882 | 1.345 | 0.815 | 0.36 | 1.998 | 0.768 | 0.664 | 0.59 | 1.279 | 0.306 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1331
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Not_Clustered
|
0.954
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
KRQK,KRVK,RRKR,RRGHMEANECKRMAKK,RRDTQQIRTLEKKKIL,RRDAEELAAWMGEKRRLM,RRGRKLKEAERTHRLRRE,KKKILQEKRQERERRKTQ,KKVVLRMGGLRERIEKVKR,RKLELSWDSLAQLAHSRRK,RRVPTFTTRRTQSIRRNSR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.296
|
0.050
|
0.019
|
0.654
|
0.076
|
0.137
|
0.213
|
0.008
|
0.485
|
0.055
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003059
|
1.000
|
2.000
|
Hsc_gene_2516.t1;Hsc_gene_2516.t2
|
Hsc_gene_2516.t1;Hsc_gene_2516.t2
|
— |
Q9NRC6.2 Spectrin beta chain, non-erythrocytic 5 [Homo sapiens]
|
KAI1719652.1 spectrin repeat domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515|GO:0005543
|
GO:0008150_0.917|GO:0005575_0.898|GO:0110165_0.890|GO:0009987_0.867|GO:0005622_0.866|GO:0043226_0.808|GO:0003674_0.779|GO:0016020_0.771|GO:0043229_0.740|GO:0005737_0.735|GO:0005488_0.731|GO:0043228_0.711|GO:0043232_0.711|GO:0005515_0.678|GO:0071944_0.669|GO:0016043_0.663|GO:0071840_0.663|GO:0005886_0.635|GO:0005856_0.566|GO:0065007_0.533|GO:0008092_0.511|GO:0043227_0.508
|
IPR001452+880-937_883-936+|IPR001589+97-106_171-195+|IPR001605+3792-3811_3812-3833+|IPR001715+95-199_96-199_97-197_214-319_215-319_216-314+|IPR002017+463-566_781-848_996-1096_1100-1200_1311-1414_1422-1530_1537-1637_1640-1740_1852-1955_2059-2162_2269-2372_2376-2474_2480-2582_2586-2688_2692-2795_2800-2902_2908-3007_3011-3114_3118-3218_3223-3325_3329-3434_3442-3540+|IPR011993+3787-3845+|IPR018159+346-452_466-566_572-676_585-766_680-864_682-777_783-992_996-1206_998-1096_1102-1204_1210-1307_1210-1416_1313-1413_1419-1530_1421-1639_1534-1745_1536-1636_1642-1742_1748-1846_1748-1956_1852-1954_1960-2055_2061-2161_2061-2266_2167-2265_2269-2478_2271-2372_2378-2475_2481-2582_2481-2691_2588-2688_2694-2795_2694-2904_2801-2902_2803-3009_2908-3006_2908-3116_3012-3113_3117-3326_3119-3219_3223-3437_3225-3325_3331-3435_3441-3541_3443-3610_3547-3683+|IPR036028+880-946+|IPR036872+70-319_84-203_204-324+
|
SM00033+97-197_216-314+|SM00150+346-452_466-566_572-676_682-777_783-992_998-1096_1102-1204_1210-1307_1313-1413_1419-1530_1536-1636_1642-1742_1748-1846_1852-1954_1960-2055_2061-2161_2167-2265_2271-2372_2378-2475_2481-2582_2588-2688_2694-2795_2801-2902_2908-3006_3012-3113_3119-3219_3225-3325_3331-3435_3441-3541_3547-3683+|SM00326+883-936+
|
PF00307+96-199_215-319+Calponin_homology_(CH)_domain|PF00435+463-566_781-848_996-1096_1100-1200_1311-1414_1422-1530_1537-1637_1640-1740_1852-1955_2059-2162_2269-2372_2376-2474_2480-2582_2586-2688_2692-2795_2800-2902_2908-3007_3011-3114_3118-3218_3223-3325_3329-3434_3442-3540+Spectrin_repeat
|
G3DSA:1.10.418.10:FF:000001+210-325+Actinin_alpha_1|G3DSA:1.10.418.10:FF:000004+84-203+Spectrin_beta_chain
|
PTHR11915+2216-2544+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-83;1050-1106;1153-1196;1432-1577;1865-1919;3610-3739
|
6.000
|
84-1049;1107-1152;1197-1431;1578-1864;1920-3609;3740-3850
|
4d1e_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.697
|
444278.490
|
5.982
|
-34.000
|
35.922
|
8.182
|
55.013
|
44.987
|
18.156
|
17.766
|
38.987
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
blue
|
6186.941
|
9956.336
|
3694.726
|
4236.951
|
4966.889
|
3144.365
|
2226.483
|
3155.821
|
5137.410
|
11446.723
|
8742.732
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.659
|
-1.370
|
0.306
|
0.197
|
-0.643
|
-0.489
|
— |
-0.359
|
— | — | — | — | — |
No JSON data available for plots.