Hg_chrom1_TN10mRNA_1393
Organism: Heterodera glycines Gene Locus: chr1:14083105-14084489 Feature type: polypeptideProtein Sequence
Length: 255
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.003 | 0.638 | 0.499 | 0.811 | 1.046 | 0.905 | 0.28 | 1.961 | 1.046 | 1.537 | 1.188 | 1.153 | 1.525 | 0.528 | 1.921 | 1.064 | 0.771 | 1.188 | 0.905 | 0.807 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1332
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
16-Not_Clustered
|
0.917
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
EKKKKARKRE,RKVRQLKLEETEFAVEKKK
|
52-72
|
0.999
|
45-71
|
0.970
|
— | — |
0.000
|
— | — |
0.942
|
0.035
|
0.047
|
0.071
|
0.015
|
0.010
|
0.034
|
0.004
|
0.011
|
0.143
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003050
|
2.000
|
1.000
|
Hsc_gene_2544.t1
|
— | — |
A8WTM7.1 Nucleolar complex protein 2 homolog [Caenorhabditis briggsae]
|
KAH7727369.1 nucleolar complex protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.908|GO:0110165_0.898|GO:0005622_0.847|GO:0016020_0.842|GO:0003674_0.837|GO:0043226_0.809|GO:0043229_0.795|GO:0005488_0.778|GO:0043227_0.767|GO:0043231_0.739|GO:0008150_0.701|GO:0009987_0.657|GO:0043228_0.631|GO:0043232_0.631|GO:0005634_0.623|GO:0031974_0.588|GO:0043233_0.586|GO:0005515_0.585|GO:0070013_0.582|GO:0031981_0.580|GO:0005737_0.572|GO:0005654_0.563|GO:0005730_0.552|GO:0071840_0.508
|
IPR005343+83-255_181-255+
|
— |
PF03715+181-255+Noc2p_family
|
— |
PTHR12687+83-255+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-3
|
1.000
|
4-255
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.710
|
29636.720
|
10.647
|
26.000
|
30.196
|
13.333
|
48.627
|
51.373
|
21.176
|
9.020
|
41.569
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
grey
|
8.075
|
1.924
|
2.899
|
3.253
|
2.480
|
2.371
|
46.663
|
16.558
|
0.000
|
6.771
|
3.869
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
4.305
|
2.692
|
1.640
|
— | — | — | — | — |
No JSON data available for plots.