SCN Proteipedia

Hg_chrom1_TN10mRNA_1394

Organism: Heterodera glycines Gene Locus: chr1:14094279-14103183 Feature type: polypeptide

Protein Sequence

Length: 2,157

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.765	1.186	0.969	0.847	0.773	0.927	0.613	1.066	1.453	1.234	0.913	1.554	1.52	0.918	1.164	1.205	1.072	1.004	0.927	0.559	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom1_TN10gene_1333	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	16-Females_and_Males	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	KRRKRLKRT	—	—	—	—	—	—	0.000	—	—	0.631	0.195	0.037	0.307	0.215	0.064	0.048	0.011	0.182	0.082

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0003051	2.000	1.000	Hsc_gene_2541.t1	—	—	P35074.2 DNA-directed RNA polymerase II subunit RPB1 [Caenorhabditis briggsae]	KAI3422210.1 meiosis-specific APC/C activator protein ama1 [Globodera pallida]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003677\|GO:0003899\|GO:0005515\|GO:0006351	GO:0005575_0.933\|GO:0110165_0.876\|GO:0016020_0.823\|GO:0005622_0.751\|GO:0043226_0.742\|GO:0008150_0.716\|GO:0043229_0.704\|GO:0009987_0.681\|GO:0043227_0.662\|GO:0043231_0.639\|GO:0003674_0.573\|GO:0005634_0.530\|GO:0008152_0.529\|GO:0044238_0.516\|GO:0009058_0.510\|GO:0044237_0.506\|GO:0043170_0.504	IPR000722+293-454+\|IPR006592+183-483+\|IPR007066+458-618+\|IPR007073+1091-1224+\|IPR007075+892-1006+\|IPR007080+13-157_174-291+\|IPR007081+764-1349+\|IPR007083+652-757+\|IPR015943+1876-2157+\|IPR036322+1907-2146+\|IPR038120+625-743+\|IPR038593+1091-1225+\|IPR042102+463-619+\|IPR044893+7-122_197-256+\|IPR045867+13-1405+	SM00663+183-483+	PF00623+293-454+RNA_polymerase_Rpb1,_domain_2\|PF04983+458-618+RNA_polymerase_Rpb1,_domain_3\|PF04990+1091-1224+RNA_polymerase_Rpb1,_domain_7\|PF04992+892-1006+RNA_polymerase_Rpb1,_domain_6\|PF04997+13-157_174-291+RNA_polymerase_Rpb1,_domain_1\|PF04998+764-1349+RNA_polymerase_Rpb1,_domain_5\|PF05000+652-757+RNA_polymerase_Rpb1,_domain_4	G3DSA:1.10.132.30:FF:000001+628-743+DNA-directed_RNA_polymerase_subunit\|G3DSA:1.10.150.390:FF:000001+1350-1394+DNA-directed_RNA_polymerase_subunit\|G3DSA:1.10.274.100:FF:000001+463-610+DNA-directed_RNA_polymerase_subunit\|G3DSA:2.40.40.20:FF:000019+373-462+DNA-directed_RNA_polymerase_II_subunit_RPB1\|G3DSA:3.30.1360.140:FF:000001+1091-1225+DNA-directed_RNA_polymerase_subunit	PTHR19376+13-1405+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	643-689	2.000	1-642;690-2157	9eh1_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.826	241692.350	8.763	61.000	23.829	10.709	47.520	52.480	13.862	9.968	50.997

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkred	greenyellow	399.407	232.716	178.631	210.213	206.698	167.601	923.557	670.096	405.318	472.349	443.621

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.611	-0.284	0.344	—	-0.288	2.473	1.897	0.605	—	—	—	—	—

No JSON data available for plots.

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