SCN Proteipedia

Hg_chrom1_TN10mRNA_1399

Organism: Heterodera glycines Gene Locus: chr1:14117110-14119934 Feature type: polypeptide

Protein Sequence

Length: 568

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.757	1.146	1.184	1.153	0.587	0.813	0.775	1.673	1.408	1.356	0.72	1.553	0.782	0.609	1.222	1.207	1.068	1.174	2.031	0.311	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom1_TN10gene_1337	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	16-Females_and_Males	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_export_signal	cytoplasm\|nucleus	—	—	—	—	—	—	—	—	0.000	—	—	0.665	0.197	0.014	0.484	0.114	0.265	0.256	0.049	0.135	0.018

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0001715	3.000	1.000	Hsc_gene_2535.t1	Hsc_gene_2535.t1	—	Q61FW2.1 F-box/WD repeat-containing protein sel-10 [Caenorhabditis briggsae]	KHN78828.1 F-box/WD repeat-containing protein 7, partial [Toxocara canis]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005515	GO:0008150_0.903\|GO:0005575_0.777\|GO:0110165_0.770\|GO:0009987_0.709\|GO:0003674_0.677\|GO:0005622_0.662\|GO:0016020_0.602\|GO:0065007_0.586\|GO:0050789_0.570\|GO:0008152_0.557\|GO:0005488_0.542\|GO:0044238_0.535\|GO:0032502_0.526\|GO:0048856_0.526\|GO:0032501_0.524\|GO:0050896_0.516\|GO:0050794_0.514\|GO:0005515_0.509\|GO:0043170_0.505	IPR001680+225-263_229-263_247-272_266-305_267-305_273-314_308-345_309-345_315-354_348-385_349-385_355-394_388-427_390-427_395-436_430-467_431-467_437-476_470-511_471-511_480-520+\|IPR001810+95-142_99-144_101-142+\|IPR015943+227-567+\|IPR019775+292-306_332-346_414-428_454-468_498-512+\|IPR020472+292-306_332-346_414-428+\|IPR036047+83-211+\|IPR036322+222-553+	SM00256+101-142+\|SM00320+225-263_266-305_308-345_348-385_388-427_430-467_470-511+	PF00400+229-263_267-305_309-345_349-385_390-427_431-467_471-511+WD_domain,_G-beta_repeat\|PF12937+99-144+F-box-like	—	PTHR19849+103-563+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-568	6y7o_C	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.763	63086.460	7.914	13.500	24.120	9.859	47.183	52.817	14.085	10.035	53.697

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkred	red	385.371	189.564	137.899	169.900	219.915	231.045	516.243	428.102	62.397	929.452	557.857

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.687	-0.295	0.409	0.339	—	1.171	0.785	0.413	-4.005	—	—	—	—

No JSON data available for plots.

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