Hg_chrom1_TN10mRNA_1403
Organism: Heterodera glycines Gene Locus: chr1:14125716-14126851 Feature type: polypeptideProtein Sequence
Length: 205
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.737 | 1.021 | 1.33 | 0.505 | 1.138 | 1.501 | 0.639 | 1.22 | 0.867 | 1.187 | 1.183 | 0.574 | 1.084 | 0.938 | 1.692 | 0.976 | 0.8 | 1.035 | 0.75 | 0.574 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1341
|
— | — |
1.111
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
16-Females_and_Males
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.536
|
0.163
|
0.013
|
0.540
|
0.134
|
0.447
|
0.203
|
0.028
|
0.304
|
0.055
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001716
|
3.000
|
1.000
|
Hsc_gene_2533.t1
|
— | — |
G5EEN4.1 Germinal center kinase 3 [Caenorhabditis elegans]
|
KAI3422204.1 Germinal center kinase 3 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004674|GO:0005524
|
GO:0005575_0.845|GO:0110165_0.837|GO:0008150_0.836|GO:0003674_0.817|GO:0005622_0.805|GO:0009987_0.779|GO:0065007_0.736|GO:0050789_0.732|GO:0050794_0.714|GO:0003824_0.693|GO:0008152_0.693|GO:0043170_0.693|GO:0050896_0.687|GO:0044237_0.679|GO:0016740_0.672|GO:0140096_0.670|GO:0016772_0.658|GO:0016301_0.654|GO:0004672_0.650|GO:0004674_0.650|GO:0016773_0.650|GO:0005737_0.584|GO:0048518_0.561|GO:0048522_0.556|GO:0006950_0.552|GO:0044238_0.540|GO:0009628_0.525|GO:0051716_0.518|GO:0006970_0.502
|
IPR024678+126-180+
|
— |
PF12202+126-180+Oxidative-stress-responsive_kinase_1_C-terminal_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-11
|
1.000
|
12-205
|
7o86_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.785
|
23365.400
|
9.084
|
6.500
|
32.683
|
9.268
|
54.634
|
45.366
|
18.537
|
14.146
|
48.293
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkred
|
grey
|
78.532
|
24.370
|
14.148
|
13.061
|
17.622
|
20.865
|
245.095
|
159.941
|
4.837
|
154.288
|
90.238
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.015
|
-1.038
|
— | — | — |
3.564
|
2.835
|
0.759
|
-5.183
|
— |
-3.011
|
— | — |
No JSON data available for plots.