Hg_chrom1_TN10mRNA_1407
Organism: Heterodera glycines Gene Locus: chr1:14133882-14136252 Feature type: polypeptideProtein Sequence
Length: 353
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.988 | 0.922 | 1.03 | 1.172 | 1.18 | 1.307 | 0.607 | 1.7 | 1.196 | 1.225 | 0.944 | 0.667 | 1.495 | 0.926 | 1.098 | 0.971 | 0.929 | 0.73 | 1.09 | 0.5 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1345
|
— | — |
1.111
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
16-Females_and_Males
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
KKPDWYQETVHRLEKTLKK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.489
|
0.273
|
0.005
|
0.588
|
0.112
|
0.068
|
0.070
|
0.054
|
0.103
|
0.139
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003056
|
2.000
|
1.000
|
Hsc_gene_2530.t1
|
— | — | — |
KAF7637317.1 TPR_REGION domain-containing protein [Meloidogyne graminicola]
|
MEO7144679
|
0.020
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.899|GO:0110165_0.898|GO:0016020_0.821|GO:0005622_0.816|GO:0043226_0.769|GO:0005737_0.756|GO:0043229_0.752|GO:0043227_0.727|GO:0043231_0.708|GO:0005739_0.552
|
IPR011990+22-176_99-175+
|
— | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
183-236
|
2.000
|
1-182;237-353
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.562
|
39732.120
|
6.755
|
2.000
|
27.762
|
11.898
|
49.292
|
50.708
|
15.014
|
12.748
|
48.725
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkred
|
grey
|
131.624
|
15.633
|
35.142
|
36.902
|
51.329
|
56.638
|
358.182
|
425.907
|
38.104
|
179.876
|
119.116
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.938
|
1.101
|
— | — | — |
2.674
|
2.808
|
— | — | — | — | — | — |
No JSON data available for plots.