Hg_chrom1_TN10mRNA_1409
Organism: Heterodera glycines Gene Locus: chr1:14144866-14148126 Feature type: polypeptideProtein Sequence
Length: 515
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.768 | 1.129 | 0.741 | 0.87 | 1.003 | 1.095 | 0.902 | 0.971 | 1.122 | 1.207 | 1.089 | 1.371 | 1.133 | 0.709 | 1.228 | 1.137 | 0.955 | 1.089 | 0.747 | 0.857 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1347
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
16-Females_and_Males
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— |
RKQKRKR
|
35-59
|
0.980
|
— | — | — | — |
0.000
|
— | — |
0.158
|
0.528
|
0.033
|
0.188
|
0.206
|
0.033
|
0.109
|
0.104
|
0.028
|
0.027
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001719
|
3.000
|
1.000
|
Hsc_gene_2527.t1
|
— | — |
Q8CFA2.1 Aminomethyltransferase, mitochondrial [Mus musculus]
|
KAI6185466.1 Aminomethyltransferase [Aphelenchoides besseyi];KAI6199307.1 Aminomethyltransferase [Aphelenchoides besseyi]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515|GO:0006355|GO:0070176
|
GO:0005575_0.850|GO:0110165_0.792|GO:0005622_0.702|GO:0016020_0.666|GO:0043226_0.662|GO:0043229_0.636|GO:0005737_0.597|GO:0008150_0.597|GO:0043227_0.592|GO:0043231_0.584|GO:0009987_0.539|GO:0003674_0.522
|
IPR006222+145-359+|IPR013977+444-510+|IPR018737+46-111+|IPR027266+142-356+|IPR028896+137-509+|IPR029043+436-511+
|
— |
PF01571+145-359+Aminomethyltransferase_folate-binding_domain|PF08669+444-510+Glycine_cleavage_T-protein_C-terminal_barrel_domain|PF10044+46-111+Retinal_tissue_protein
|
G3DSA:3.30.70.1400:FF:000001+190-281+Aminomethyltransferase
|
PTHR43757+137-509+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
514-515
|
1.000
|
1-513
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.885
|
57354.780
|
9.358
|
21.000
|
25.243
|
9.903
|
48.155
|
51.845
|
15.146
|
10.097
|
50.291
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkred
|
grey
|
323.445
|
220.334
|
137.543
|
129.206
|
138.730
|
135.224
|
420.764
|
361.225
|
322.030
|
594.916
|
477.965
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.910
|
-0.907
|
— | — | — |
1.650
|
1.314
|
0.364
|
— | — | — | — | — |
No JSON data available for plots.