Hg_chrom1_TN10mRNA_141
Organism: Heterodera glycines Gene Locus: chr1:1030535-1038343 Feature type: polypeptideProtein Sequence
Length: 756
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.861 | 0.892 | 0.794 | 0.912 | 0.904 | 1.933 | 1.559 | 1.323 | 0.823 | 0.769 | 0.661 | 1.167 | 1.102 | 1.959 | 1.242 | 0.869 | 0.629 | 0.701 | 1.018 | 0.35 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_137
|
— | — |
1.444
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
2.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
cell_membrane
|
— |
KRVK,RRRGYIDPSRRKRAV,RRFGARREQFRKRDM
|
— | — | — | — | — | — |
0.000
|
— | — |
0.155
|
0.057
|
0.016
|
0.138
|
0.429
|
0.129
|
0.212
|
0.010
|
0.531
|
0.167
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000277
|
7.000
|
2.000
|
Hsc_gene_19559.t1;Hsc_gene_22469.t1
|
Hsc_gene_10540.t1;Hsc_gene_10540.t2;Hsc_gene_1151.t2;Hsc_gene_12064.t1;Hsc_gene_13038.t1;Hsc_gene_16386.t1;Hsc_gene_19559.t1;Hsc_gene_22469.t1;Hsc_gene_25723.t1;Hsc_gene_2920.t1;Hsc_gene_450.t1;Hsc_gene_451.t1;Hsc_gene_452.t1;Hsc_gene_5313.t1;Hsc_gene_5850.t1;Hsc_gene_787.t1;Hsc_gene_787.t2;Hsc_gene_9622.t1
|
— |
P34804.3 Cuticle collagen 40 [Caenorhabditis elegans]
|
KAF7629941.1 Col_cuticle_N domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0042302
|
— |
IPR002486+485-537_488-537+|IPR008160+616-673_682-740+|IPR050632+491-754+
|
SM01088+485-537+
|
PF01391+616-673_682-740+Collagen_triple_helix_repeat_(20_copies)|PF01484+488-537+Nematode_cuticle_collagen_N-terminal_domain
|
— |
PTHR24637+491-754+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-110;524-756
|
1.000
|
111-523
|
9han_F
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.954
|
81204.150
|
7.993
|
15.000
|
22.884
|
9.127
|
44.180
|
55.820
|
13.095
|
9.788
|
56.085
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
darkred
|
5275.890
|
419.041
|
114.694
|
101.223
|
4836.570
|
53445.925
|
679.868
|
230.535
|
54.740
|
605.519
|
369.471
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.099
|
-2.187
|
— |
5.545
|
3.483
|
-6.288
|
-7.973
|
1.707
|
-3.558
|
— |
3.250
|
— | — |
No JSON data available for plots.