Hg_chrom1_TN10mRNA_1413
Organism: Heterodera glycines Gene Locus: chr1:14222658-14227127 Feature type: polypeptideProtein Sequence
Length: 432
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.969 | 1.023 | 0.968 | 0.239 | 2.701 | 2.255 | 0.716 | 0.81 | 0.72 | 0.688 | 1.298 | 2.179 | 0.514 | 1.024 | 1.464 | 0.694 | 0.304 | 0.491 | 0.712 | 0.817 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1351
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.874
|
0.171
|
0.010
|
0.375
|
0.046
|
0.027
|
0.066
|
0.004
|
0.144
|
0.070
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006089
|
1.000
|
1.000
|
Hsc_gene_23013.t1
|
Hsc_gene_23013.t1
|
— |
Q56A18.1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 [Rattus norvegicus]
|
KAI1728248.1 HMG (high mobility group) box domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.813|GO:0003674_0.740|GO:0005488_0.740|GO:0009987_0.732|GO:0005575_0.719|GO:0110165_0.718|GO:0005622_0.702|GO:0043226_0.619|GO:0043229_0.590|GO:0016020_0.560|GO:0008152_0.525|GO:0043170_0.525|GO:0065007_0.521|GO:0009058_0.519|GO:0009059_0.519|GO:0010467_0.519|GO:0044237_0.519|GO:0044249_0.519|GO:0006139_0.514|GO:0044238_0.514|GO:0050789_0.509|GO:0090304_0.502
|
IPR009071+22-92_23-91+|IPR036910+13-92_19-121+
|
SM00398+22-92+
|
PF00505+23-91+HMG_(high_mobility_group)_box
|
— |
PTHR46232+7-411+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-40;92-141;251-432
|
2.000
|
41-91;142-250
|
7cyu_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.755
|
49948.140
|
4.675
|
-21.500
|
38.889
|
7.176
|
58.796
|
41.204
|
17.361
|
21.528
|
40.046
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
turquoise
|
677.733
|
888.540
|
664.977
|
626.527
|
749.695
|
650.224
|
721.649
|
457.981
|
379.134
|
895.884
|
674.419
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.649
|
-0.641
|
— |
0.227
|
-0.191
|
0.160
|
-0.613
|
0.799
|
— | — | — | — | — |
No JSON data available for plots.