Hg_chrom1_TN10mRNA_1414
Organism: Heterodera glycines Gene Locus: chr1:14228651-14232539 Feature type: polypeptideProtein Sequence
Length: 402
(Signal peptide: 1-30)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.099 | 1.041 | 0.769 | 1.287 | 0.912 | 0.893 | 0.681 | 1.866 | 1.382 | 1.479 | 0.528 | 1.463 | 1.52 | 1.005 | 0.914 | 1.244 | 0.652 | 0.678 | 1.339 | 0.732 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1352
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
1-Not_Clustered
|
0.600
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular|lysosome_vacuole
|
chloroplast
|
— | — | — |
25-65
|
0.892
|
1-30
|
0.902
|
0.902
|
0.000
|
0.000
|
0.151
|
0.382
|
0.098
|
0.269
|
0.286
|
0.607
|
0.647
|
0.074
|
0.336
|
0.805
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006090
|
1.000
|
1.000
|
Hsc_gene_23014.t1
|
Hsc_gene_23014.t1
|
— |
Q0CBM7.1 Probable feruloyl esterase A [Aspergillus terreus NIH2624]
|
KAI1722085.1 lipase (class 3) domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006629
|
GO:0003674_0.876|GO:0005575_0.788|GO:0003824_0.780|GO:0110165_0.779|GO:0016787_0.699|GO:0008150_0.674|GO:0016788_0.665|GO:0052689_0.654|GO:0016020_0.608|GO:0005622_0.597|GO:0005737_0.569|GO:0043226_0.526|GO:0043229_0.517|GO:0009987_0.514|GO:0043227_0.512
|
IPR002921+163-300+|IPR029058+109-379_145-345+
|
— |
PF01764+163-300+Lipase_(class_3)
|
— |
PTHR45908+91-386+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
400-402
|
1.000
|
1-399
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.648
|
44668.280
|
6.541
|
0.500
|
21.393
|
13.433
|
42.040
|
57.960
|
11.692
|
9.701
|
50.000
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
blue
|
97.978
|
17.450
|
4.554
|
4.489
|
11.992
|
36.721
|
18.678
|
11.869
|
6.681
|
383.986
|
222.284
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.164
|
-2.095
|
— |
1.381
|
1.633
|
-0.962
|
-1.743
|
0.803
|
-5.927
|
— |
-4.476
|
— | — |