SCN Proteipedia

Hg_chrom1_TN10mRNA_1418

Organism: Heterodera glycines Gene Locus: chr1:14254888-14255208 Feature type: polypeptide

Protein Sequence

Length: 90

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.421	1.034	0.202	0.383	0.926	1.425	0.661	2.778	0.741	1.351	1.01	3.268	0.926	0.641	3.401	0.476	0.364	0.337	0.0	0.654	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom1_TN10gene_1356	—	—	1.111	2.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	10-Not_Clustered	0.895

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal\|nuclear_export_signal	nucleus	—	KKALARAERRRLRRA,RRATPKYRSLHANRERQR,KALARAERRRLRRATPKYRSL	11-34	0.997	—	—	—	—	0.000	—	—	0.858	0.155	0.004	0.396	0.061	0.036	0.075	0.004	0.058	0.021

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0003038	2.000	1.000	Hsc_gene_2515.t1	Hsc_gene_2515.t1	—	Q18590.1 Helix-loop-helix protein 15 [Caenorhabditis elegans]	KAF7638384.1 BHLH domain-containing protein [Meloidogyne graminicola]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0000981\|GO:0006357\|GO:0046983	GO:0008150_0.881\|GO:0065007_0.799\|GO:0009987_0.791\|GO:0050789_0.785\|GO:0050794_0.766\|GO:0003674_0.732\|GO:0005488_0.732\|GO:0005575_0.721\|GO:0032501_0.692\|GO:0048518_0.682\|GO:0110165_0.655\|GO:0048522_0.654\|GO:0008152_0.630\|GO:0009058_0.630\|GO:0009059_0.630\|GO:0043170_0.630\|GO:0044237_0.630\|GO:0044249_0.630\|GO:0010467_0.627\|GO:0019222_0.613\|GO:0044238_0.613\|GO:0080090_0.613\|GO:0060255_0.608\|GO:0031323_0.606\|GO:0006139_0.602\|GO:0034654_0.602\|GO:0009889_0.596\|GO:0010556_0.595\|GO:0031326_0.595\|GO:0016070_0.590\|GO:0032774_0.590\|GO:0090304_0.590\|GO:0141187_0.590\|GO:0010468_0.589\|GO:0009893_0.584\|GO:0010604_0.579\|GO:0009891_0.576\|GO:0019219_0.576\|GO:0031325_0.576\|GO:0051252_0.574\|GO:0006351_0.573\|GO:0032502_0.571\|GO:0006355_0.569\|GO:0031328_0.569\|GO:0048856_0.569\|GO:2001141_0.569\|GO:0005622_0.568\|GO:0010557_0.568\|GO:0007275_0.560\|GO:0045935_0.558\|GO:0051254_0.557\|GO:0045893_0.554\|GO:1902680_0.554\|GO:0043226_0.545\|GO:0097159_0.533\|GO:0043229_0.530\|GO:0003676_0.522\|GO:0003677_0.504	IPR011598+27-84_29-84_33-90+\|IPR036638+23-90_26-89+\|IPR040238+8-89+	SM00353+33-90+	PF00010+29-84+Helix-loop-helix_DNA-binding_domain	—	PTHR13864+8-89+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	full	1-90	0.000	—	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.975	10578.400	12.229	17.500	35.556	11.111	51.111	48.889	28.889	6.667	35.556

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	brown	17.135	52.682	50.852	37.991	13.049	9.243	9.105	22.873	2.056	0.000	0.881

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	—	-0.609	—	-1.578	—	—	1.201	-1.189	—	4.307	—	—	—

No JSON data available for plots.

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