Hg_chrom1_TN10mRNA_1419
Organism: Heterodera glycines Gene Locus: chr1:14255471-14256401 Feature type: polypeptideProtein Sequence
Length: 159
(Signal peptide: 1-21)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.024 | 0.585 | 0.686 | 1.735 | 0.314 | 0.968 | 1.198 | 0.629 | 0.699 | 1.19 | 0.762 | 0.37 | 1.747 | 0.968 | 1.155 | 1.168 | 0.825 | 0.858 | 3.387 | 1.48 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1357
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
Hsc_gene_2514
|
— |
21-pJ2_J3
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
— | — | — | — | — | — |
1-21
|
0.994
|
1.000
|
0.000
|
0.000
|
0.279
|
0.291
|
0.163
|
0.181
|
0.084
|
0.100
|
0.079
|
0.072
|
0.308
|
0.868
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003037
|
2.000
|
1.000
|
Hsc_gene_2514.t1
|
Hsc_gene_2514.t1
|
— | — |
AVA09707.1 putative effector protein [Heterodera avenae]
|
No
|
-0.200
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR001304+23-147_32-147_46-148+|IPR016186+21-156+|IPR016187+20-149+|IPR050976+53-150+
|
SM00034+23-147+
|
PF00059+46-148+Lectin_C-type_domain
|
— |
PTHR22991+53-150+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-159
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.845
|
17731.370
|
9.049
|
9.000
|
17.610
|
16.981
|
37.107
|
62.893
|
11.950
|
5.660
|
54.088
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
purple
|
428.370
|
35.538
|
62.236
|
2888.112
|
1142.433
|
515.986
|
65.629
|
55.258
|
8.807
|
80.565
|
49.811
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.579
|
6.209
|
5.643
|
-1.371
|
-1.130
|
-2.964
|
-3.334
|
— | — |
8.571
|
— | — | — |