Hg_chrom1_TN10mRNA_1424
Organism: Heterodera glycines Gene Locus: chr1:14267043-14268434 Feature type: polypeptideProtein Sequence
Length: 245
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.664 | 1.329 | 0.816 | 0.563 | 1.02 | 0.523 | 0.534 | 0.816 | 1.542 | 1.71 | 1.361 | 0.24 | 2.154 | 0.392 | 0.833 | 1.633 | 0.937 | 0.804 | 1.256 | 0.36 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1362
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
17-Not_Clustered
|
0.955
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
endoplasmic_reticulum
|
— | — |
38-62
|
0.991
|
— | — | — | — |
0.000
|
— | — |
0.214
|
0.334
|
0.065
|
0.233
|
0.887
|
0.108
|
0.235
|
0.280
|
0.072
|
0.005
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006093
|
1.000
|
1.000
|
Hsc_gene_2511.t1
|
Hsc_gene_2511.t1
|
— | — |
KAH7710587.1 Signal recognition particle receptor [Aphelenchus avenae]
|
No
|
0.070
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003924|GO:0005525
|
GO:0005575_0.799|GO:0110165_0.797|GO:0016020_0.723|GO:0005622_0.648|GO:0071944_0.641|GO:0005886_0.626|GO:0043226_0.625|GO:0043229_0.618|GO:0005737_0.602|GO:0043227_0.584|GO:0043231_0.569|GO:0008150_0.563|GO:0005773_0.503
|
IPR006689+46-69_152-173+|IPR019009+44-218+|IPR024156+37-179+|IPR027417+38-232_39-245+
|
— |
PF09439+44-218+Signal_recognition_particle_receptor_beta_subunit
|
— |
PTHR11711+37-179+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-245
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.860
|
27645.880
|
9.430
|
8.000
|
25.306
|
12.245
|
50.204
|
49.796
|
14.694
|
10.612
|
46.531
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
midnightblue
|
1506.130
|
884.384
|
1347.604
|
1191.588
|
1300.475
|
1113.870
|
1045.980
|
1109.165
|
1170.082
|
2714.357
|
2052.525
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.378
|
0.293
|
— | — |
-0.209
|
— | — | — | — | — | — | — | — |
No JSON data available for plots.