Hg_chrom1_TN10mRNA_1425
Organism: Heterodera glycines Gene Locus: chr1:14268895-14270898 Feature type: polypeptideProtein Sequence
Length: 364
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.342 | 0.639 | 0.3 | 0.663 | 0.183 | 0.845 | 1.079 | 1.236 | 1.221 | 1.485 | 0.291 | 0.808 | 2.06 | 1.479 | 0.673 | 1.805 | 0.676 | 1.29 | 1.268 | 0.323 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1363
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Egg_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
lysosome_vacuole
|
— | — | — | — |
50-73
|
0.987
|
— | — |
0.000
|
— | — |
0.123
|
0.199
|
0.080
|
0.305
|
0.345
|
0.664
|
0.360
|
0.144
|
0.474
|
0.050
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006094
|
1.000
|
1.000
|
Hsc_gene_2510.t1
|
Hsc_gene_2510.t1
|
— |
Q5I4F8.1 Aquaporin-8 [Notomys alexis]
|
KAI1720509.1 major intrinsic protein domain-containing protein [Ditylenchus destructor]
|
No
|
-0.060
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0015267|GO:0016020|GO:0055085
|
GO:0005575_0.812|GO:0110165_0.809|GO:0008150_0.778|GO:0016020_0.767|GO:0009987_0.607|GO:0005622_0.589|GO:0043226_0.587|GO:0071944_0.575|GO:0043229_0.567|GO:0005737_0.559|GO:0005886_0.542|GO:0043227_0.540|GO:0043231_0.531|GO:0003674_0.530|GO:0051179_0.510|GO:0051234_0.510|GO:0006810_0.502
|
IPR000425+121-350_122-141_123-353_126-350_160-184_197-216_247-265_333-353+|IPR022357+178-186+|IPR023271+114-361_121-358+|IPR034294+118-356+
|
— |
PF00230+121-350+Major_intrinsic_protein
|
— |
PTHR19139+118-356+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-45
|
1.000
|
46-364
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.972
|
38003.180
|
9.637
|
13.500
|
10.440
|
12.637
|
33.242
|
66.758
|
7.692
|
2.747
|
59.890
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
turquoise
|
707.421
|
1405.646
|
660.956
|
269.250
|
315.608
|
420.107
|
902.796
|
1087.037
|
164.058
|
1073.899
|
683.967
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.316
|
-2.521
|
-1.188
|
0.197
|
0.427
|
1.113
|
1.265
|
— |
-2.865
|
— | — | — | — |
No JSON data available for plots.