SCN Proteipedia

Hg_chrom1_TN10mRNA_1426

Organism: Heterodera glycines Gene Locus: chr1:14271187-14274724 Feature type: polypeptide

Protein Sequence

Length: 652

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.999	0.927	1.032	0.529	1.227	1.062	0.785	1.457	1.057	1.223	0.999	0.812	0.937	0.737	1.346	1.183	0.981	0.744	0.944	0.947	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom1_TN10gene_1364	—	—	1.111	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	2.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	25-Eggs_Female	0.991

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	KPRK,RRMAPKHIFNVKKAAR	—	—	—	—	—	—	0.000	—	—	0.859	0.124	0.025	0.274	0.086	0.060	0.074	0.029	0.084	0.036

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0006095	1.000	1.000	Hsc_gene_2509.t1	Hsc_gene_2509.t1	—	Q9BTC8.2 Metastasis-associated protein MTA3 [Homo sapiens]	KAI3422178.1 Metastasis-associated protein mta1 [Globodera pallida]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003682	GO:0005575_0.911\|GO:0110165_0.906\|GO:0008150_0.895\|GO:0005622_0.843\|GO:0009987_0.842\|GO:0016020_0.805\|GO:0043226_0.796\|GO:0043229_0.786\|GO:0043227_0.746\|GO:0003674_0.738\|GO:0043231_0.721\|GO:0005488_0.673\|GO:0005634_0.642\|GO:0016043_0.626\|GO:0071840_0.626\|GO:0065007_0.623\|GO:0050789_0.606\|GO:0050794_0.592\|GO:0005515_0.551\|GO:0005737_0.501	IPR000949+214-340_216-282_216-285+\|IPR001005+369-418_372-416+\|IPR001025+4-213_152-211+\|IPR009057+371-422+\|IPR017884+368-420+\|IPR035170+554-622+\|IPR040138+1-632+\|IPR043151+2-90_116-210+	SM00439+4-213+\|SM00717+369-418+\|SM01189+216-285+	PF00249+372-416+Myb-like_DNA-binding_domain\|PF01426+152-211+BAH_domain\|PF01448+216-282+ELM2_domain\|PF17226+554-622+MTA_R1_domain	G3DSA:1.10.10.60:FF:000012+368-432+Metastasis-associated_1_family,_member_3\|G3DSA:4.10.1240.50:FF:000001+212-343+Metastasis-associated_1_family,_member_3	PTHR10865+1-632+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	57-143	2.000	1-56;144-652	5icn_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.720	72963.180	7.708	10.500	29.141	10.736	51.534	48.466	16.104	13.037	49.387

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	grey	1335.612	2453.717	1658.194	1608.108	1529.961	1343.520	1874.886	1412.292	1229.255	466.107	793.171

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.794	-0.747	—	-0.104	-0.173	0.491	—	0.550	—	—	—	—	—

No JSON data available for plots.

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