Hg_chrom1_TN10mRNA_1427
Organism: Heterodera glycines Gene Locus: chr1:14275291-14276989 Feature type: polypeptideProtein Sequence
Length: 445
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.941 | 0.679 | 0.735 | 0.852 | 1.273 | 1.21 | 0.749 | 0.674 | 1.248 | 1.458 | 1.021 | 1.718 | 1.436 | 0.821 | 1.422 | 1.188 | 0.553 | 0.885 | 0.691 | 0.463 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1365
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Eggs_Female
|
0.976
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — |
9-29
|
0.932
|
22-58
|
0.975
|
— | — |
0.072
|
— | — |
0.153
|
0.913
|
0.047
|
0.216
|
0.125
|
0.037
|
0.133
|
0.025
|
0.022
|
0.054
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006096
|
1.000
|
1.000
|
Hsc_gene_2508.t1
|
Hsc_gene_2508.t1
|
— |
P34388.2 Small ribosomal subunit protein uS9m [Caenorhabditis elegans]
|
KAI6201829.1 putative 40S ribosomal protein S9, mitochondrial [Aphelenchoides besseyi]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003735|GO:0005840|GO:0006412
|
GO:0005575_0.920|GO:0110165_0.920|GO:0016020_0.841|GO:0005622_0.823|GO:0043226_0.761|GO:0043229_0.751|GO:0005737_0.747|GO:0043227_0.714|GO:0043231_0.688|GO:0005739_0.523
|
IPR000754+315-445_326-445+|IPR014721+321-445+|IPR020568+325-445+
|
— |
PF00380+326-445+Ribosomal_protein_S9/S16
|
— |
PTHR21569+315-445+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-445
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.797
|
49853.750
|
8.816
|
12.000
|
26.742
|
8.989
|
46.067
|
53.933
|
15.056
|
11.685
|
45.618
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
2019.620
|
2273.914
|
2171.008
|
1794.429
|
1910.718
|
1981.233
|
2232.013
|
2241.063
|
1740.512
|
2053.813
|
1919.541
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.295
|
-0.479
|
-0.167
|
— | — |
0.183
|
— | — | — | — | — | — | — |
No JSON data available for plots.