Hg_chrom1_TN10mRNA_1428
Organism: Heterodera glycines Gene Locus: chr1:14277116-14281447 Feature type: polypeptideProtein Sequence
Length: 723
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.643 | 1.061 | 0.93 | 1.335 | 0.968 | 0.887 | 0.692 | 1.176 | 1.014 | 1.421 | 0.943 | 1.22 | 2.036 | 0.638 | 0.96 | 1.581 | 0.839 | 0.796 | 1.596 | 0.366 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1366
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
0.992
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— | — | — | — |
49-73
|
0.998
|
— | — |
0.000
|
— | — |
0.517
|
0.095
|
0.009
|
0.538
|
0.174
|
0.197
|
0.168
|
0.090
|
0.141
|
0.024
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003060
|
1.000
|
2.000
|
Hsc_gene_2507.t1;Hsc_gene_2507.t2
|
Hsc_gene_2507.t1;Hsc_gene_2507.t2
|
— |
Q09589.2 Protein HIRA [Caenorhabditis elegans]
|
KAF7634669.1 Protein HIRA [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515|GO:0005634|GO:0006325|GO:0006351
|
GO:0008150_0.897|GO:0009987_0.847|GO:0005575_0.828|GO:0110165_0.770|GO:0016020_0.705|GO:0005622_0.694|GO:0043226_0.663|GO:0043229_0.632|GO:0043227_0.609|GO:0043231_0.606|GO:0016043_0.587|GO:0071840_0.587|GO:0003674_0.544|GO:0006325_0.504
|
IPR001680+1-36_120-159_122-159_127-159_167-206_171-205_174-215_261-313_317-355+|IPR015943+2-165_166-253_254-377+|IPR031120+463-709+|IPR036322+4-354_287-640+
|
SM00320+1-36_120-159_167-206_261-313_317-355+
|
PF00400+122-159_171-205+WD_domain,_G-beta_repeat
|
— |
PTHR13831+463-709+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-723
|
8pvl_Ch
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.772
|
81374.050
|
7.332
|
8.500
|
24.205
|
13.001
|
48.409
|
51.591
|
13.278
|
10.927
|
49.654
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
2538.368
|
3641.792
|
2353.583
|
2008.998
|
2054.404
|
1767.312
|
2080.454
|
2745.859
|
1404.984
|
3806.972
|
2777.549
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.860
|
-0.995
|
-0.119
|
— |
-0.203
|
0.244
|
0.531
|
-0.260
|
-1.553
|
— | — | — | — |
No JSON data available for plots.