Hg_chrom1_TN10mRNA_143
Organism: Heterodera glycines Gene Locus: chr1:1048318-1054981 Feature type: polypeptideProtein Sequence
Length: 522
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.337 | 0.98 | 1.01 | 0.595 | 0.894 | 0.737 | 1.117 | 1.149 | 0.894 | 1.476 | 0.958 | 1.578 | 1.064 | 0.7 | 0.626 | 0.876 | 1.005 | 1.219 | 0.295 | 0.563 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_139
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.368
|
0.400
|
0.071
|
0.694
|
0.245
|
0.148
|
0.195
|
0.020
|
0.114
|
0.068
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002880
|
1.000
|
2.000
|
Hsc_gene_20322.t1;Hsc_gene_20322.t2
|
Hsc_gene_20322.t1;Hsc_gene_20322.t2;Hsc_gene_20322.t3
|
— |
P34629.1 Leucine aminopeptidase 1 [Caenorhabditis elegans]
|
KAI6232390.1 CYTOSOL-AP domain-containing protein [Aphelenchoides besseyi]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005737|GO:0006508|GO:0019538|GO:0030145|GO:0046872|GO:0070006
|
GO:0003674_0.672|GO:0005575_0.652|GO:0110165_0.644|GO:0008150_0.633|GO:0005622_0.513
|
IPR000819+190-506_352-359+|IPR011356+40-510_91-515_267-284_289-310_326-347_348-368_377-392+|IPR041417+53-147+
|
— |
PF00883+190-506+Cytosol_aminopeptidase_family,_catalytic_domain|PF18295+53-147+M17_aminopeptidase_N-terminal_domain_2
|
— |
PTHR11963+91-515+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-522
|
5ntg_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.635
|
55407.520
|
6.237
|
-2.000
|
22.605
|
8.429
|
41.954
|
58.046
|
11.686
|
10.920
|
56.322
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
3658.121
|
1524.753
|
3081.421
|
6327.529
|
6752.035
|
7400.593
|
4338.876
|
2693.802
|
3301.644
|
1483.417
|
2262.657
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.788
|
1.916
|
1.145
|
— | — |
-0.760
|
-1.565
|
0.831
|
— | — |
2.595
|
— | — |
No JSON data available for plots.