Hg_chrom1_TN10mRNA_1430
Organism: Heterodera glycines Gene Locus: chr1:14285080-14289626 Feature type: polypeptideProtein Sequence
Length: 677
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.013 | 1.305 | 1.047 | 0.509 | 0.763 | 0.682 | 1.002 | 1.551 | 0.722 | 1.098 | 0.649 | 1.651 | 1.026 | 1.108 | 1.326 | 1.013 | 1.162 | 0.918 | 1.363 | 0.956 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1368
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
Hsc_gene_2505
|
— |
7-ppJ2
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
chloroplast
|
— |
22-58
|
0.897
|
38-66
|
0.995
|
— |
0.607
|
0.410
|
0.000
|
— |
0.244
|
0.281
|
0.018
|
0.177
|
0.144
|
0.066
|
0.155
|
0.065
|
0.213
|
0.870
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006098
|
1.000
|
1.000
|
Hsc_gene_2505.t1
|
Hsc_gene_2505.t1
|
— |
G5ECN9.1 Neuroendocrine convertase 2 [Caenorhabditis elegans]
|
AAK66762.1 proprotein convertase 2 [Heterodera glycines]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004252|GO:0006508|GO:0008236
|
GO:0008150_0.951|GO:0009987_0.872|GO:0005575_0.810|GO:0110165_0.810|GO:0003674_0.763|GO:0008152_0.674|GO:0065007_0.671|GO:0016020_0.648|GO:0044238_0.648|GO:0003824_0.647|GO:0043170_0.620|GO:0044237_0.619|GO:0009058_0.612|GO:0044249_0.591|GO:0019538_0.587|GO:0016787_0.577|GO:0005622_0.576|GO:0009059_0.571|GO:0010467_0.562|GO:0071944_0.555|GO:0140096_0.548|GO:0006508_0.545|GO:0008233_0.540|GO:0005886_0.520|GO:0051604_0.519|GO:0016485_0.517
|
IPR000209+178-489+|IPR002884+505-647_548-618+|IPR008979+497-649+|IPR015500+178-197_224-237_400-416+|IPR022398+228-238+|IPR023827+183-194+|IPR023828+401-411+|IPR032815+43-120+|IPR034182+141-436+|IPR036852+140-503_143-501+|IPR038466+36-120+
|
— |
PF00082+178-489+Subtilase_family|PF01483+548-618+Proprotein_convertase_P-domain|PF16470+43-120+Peptidase_S8_pro-domain
|
G3DSA:2.60.120.260:FF:000020+504-644+neuroendocrine_convertase_2|G3DSA:3.40.50.200:FF:000004+143-501+Proprotein_convertase_type_2
|
PTHR42884+21-646+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
628-677
|
1.000
|
1-627
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.847
|
74692.170
|
8.040
|
13.500
|
24.225
|
11.817
|
46.677
|
53.323
|
13.885
|
10.340
|
55.982
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
8803.765
|
8322.476
|
42549.870
|
21319.429
|
4377.607
|
1509.762
|
449.474
|
15714.040
|
1688.226
|
1909.304
|
1814.556
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.126
|
1.220
|
-0.890
|
-2.316
|
-1.522
|
-1.737
|
3.281
|
-4.987
|
— |
3.833
|
— | — | — |