Hg_chrom1_TN10mRNA_1435
Organism: Heterodera glycines Gene Locus: chr1:14302876-14307558 Feature type: polypeptideProtein Sequence
Length: 910
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.984 | 0.792 | 1.019 | 0.379 | 1.099 | 0.902 | 0.968 | 2.198 | 1.099 | 1.277 | 0.683 | 1.228 | 1.679 | 0.993 | 1.39 | 0.832 | 0.613 | 1.132 | 1.014 | 0.42 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1373
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
0.976
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— |
RRRK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.104
|
0.841
|
0.038
|
0.284
|
0.051
|
0.058
|
0.079
|
0.005
|
0.047
|
0.033
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006101
|
1.000
|
1.000
|
Hsc_gene_2500.t1
|
Hsc_gene_2500.t1
|
— |
Q23629.4 Probable 2-oxoglutarate dehydrogenase E1 component DHKTD1 homolog, mitochondrial [Caenorhabditis elegans]
|
KAI1719617.1 transketolase, pyrimidine binding domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016624|GO:0030976
|
GO:0008150_0.727|GO:0005575_0.706|GO:0110165_0.702|GO:0009987_0.657|GO:0005622_0.592|GO:0016020_0.576|GO:0003674_0.574|GO:0005737_0.557
|
IPR001017+285-503+|IPR005475+571-776_572-777+|IPR011603+39-910_60-909+|IPR029061+122-516_561-784+|IPR031717+782-908+|IPR042179+703-905+
|
SM00861+572-777+
|
PF00676+285-503+Dehydrogenase_E1_component|PF02779+571-776+Transketolase,_pyrimidine_binding_domain|PF16870+782-908+2-oxoglutarate_dehydrogenase_C-terminal
|
— |
PTHR23152+60-909+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
908-910
|
1.000
|
1-907
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.649
|
101547.890
|
7.066
|
12.000
|
27.912
|
13.187
|
44.396
|
55.604
|
15.714
|
12.198
|
48.901
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
1499.234
|
2461.510
|
1909.302
|
1592.247
|
1215.884
|
1344.333
|
1387.409
|
1450.164
|
1341.922
|
1292.388
|
1313.617
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.596
|
-0.766
|
-0.153
|
-0.421
|
0.160
|
— | — | — | — | — | — | — | — |
No JSON data available for plots.