Hg_chrom1_TN10mRNA_1436
Organism: Heterodera glycines Gene Locus: chr1:14307880-14310462 Feature type: polypeptideProtein Sequence
Length: 473
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.59 | 1.229 | 0.999 | 0.802 | 1.727 | 1.138 | 0.403 | 1.48 | 1.315 | 1.371 | 1.057 | 0.995 | 2.055 | 0.854 | 1.079 | 0.785 | 0.485 | 1.057 | 0.651 | 0.746 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1374
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Not_Clustered
|
0.952
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— |
KRVSLNECIDFLAIRKDKF
|
— | — | — | — | — | — |
0.000
|
— | — |
0.448
|
0.143
|
0.021
|
0.590
|
0.119
|
0.211
|
0.188
|
0.096
|
0.145
|
0.032
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006102
|
1.000
|
1.000
|
Hsc_gene_2499.t1
|
Hsc_gene_2499.t1
|
— |
Q28651.1 Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit gamma isoform [Oryctolagus cuniculus]
|
KAI3422162.1 Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit gamma isoform [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000159|GO:0007165|GO:0019888
|
GO:0005575_0.892|GO:0110165_0.871|GO:0005622_0.836|GO:0005737_0.724|GO:0008150_0.684|GO:0009987_0.618|GO:0043226_0.596|GO:0003674_0.588|GO:0043229_0.578|GO:0016020_0.567|GO:0005488_0.513
|
IPR002554+23-391_55-391_61-391_389-467+|IPR011989+68-443+|IPR016024+73-429+
|
— |
PF01603+61-391+Protein_phosphatase_2A_regulatory_B_subunit_(B56_family)
|
G3DSA:1.25.10.10:FF:000353+61-274+Serine/threonine-protein_phosphatase_2A_56_kDa_regulatory_subunit
|
PTHR10257+55-391+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
453-473
|
1.000
|
1-452
|
8u89_B
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.687
|
55182.110
|
5.308
|
-10.000
|
31.078
|
13.742
|
49.260
|
50.740
|
15.222
|
15.856
|
41.438
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
orange
|
1219.076
|
1471.481
|
1324.628
|
1100.922
|
1034.036
|
967.156
|
1140.129
|
1653.713
|
1467.838
|
973.053
|
1185.104
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.382
|
-0.556
|
-0.158
|
-0.123
|
— |
0.247
|
0.670
|
-0.395
|
— | — | — | — | — |
No JSON data available for plots.