Hg_chrom1_TN10mRNA_1437
Organism: Heterodera glycines Gene Locus: chr1:14310598-14313859 Feature type: polypeptideProtein Sequence
Length: 719
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.615 | 1.423 | 0.986 | 0.767 | 0.974 | 1.034 | 0.348 | 0.834 | 1.453 | 1.879 | 0.906 | 2.127 | 2.048 | 0.669 | 0.71 | 1.53 | 0.616 | 0.716 | 0.535 | 0.655 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1375
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-Not_Clustered
|
0.718
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.708
|
0.163
|
0.007
|
0.579
|
0.198
|
0.327
|
0.148
|
0.020
|
0.072
|
0.040
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006103
|
1.000
|
1.000
|
Hsc_gene_2498.t1
|
Hsc_gene_2498.t1
|
— |
Q7T322.1 N-alpha-acetyltransferase 35, NatC auxiliary subunit [Danio rerio]
|
KAI3422162.1 Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit gamma isoform [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0017196|GO:0031417
|
GO:0005575_0.919|GO:0110165_0.918|GO:0005622_0.863|GO:0008150_0.802|GO:0009987_0.764|GO:0005737_0.661|GO:0065007_0.506
|
IPR007244+5-716_33-111+
|
— |
PF04112+33-111+Mak10_subunit,_NatC_N(alpha)-terminal_acetyltransferase
|
— |
PTHR21373+5-716+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-719
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.610
|
81897.820
|
5.558
|
-7.000
|
22.392
|
11.961
|
47.010
|
52.990
|
11.127
|
11.266
|
44.645
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
darkgrey
|
1680.188
|
1412.260
|
1338.861
|
1526.535
|
1750.202
|
1705.149
|
1221.823
|
1560.233
|
1103.197
|
2580.277
|
1947.243
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.306
|
— |
0.297
|
0.165
|
— |
-0.475
|
— | — | — | — | — | — | — |
No JSON data available for plots.