Hg_chrom1_TN10mRNA_1438
Organism: Heterodera glycines Gene Locus: chr1:14320736-14322606 Feature type: polypeptideProtein Sequence
Length: 152
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.071 | 1.836 | 1.196 | 0.0 | 1.864 | 1.687 | 0.47 | 0.658 | 0.877 | 1.067 | 1.396 | 1.161 | 0.548 | 1.139 | 0.403 | 1.41 | 0.971 | 0.498 | 0.0 | 0.387 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1376
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-pJ2_J3_J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.574
|
0.187
|
0.006
|
0.521
|
0.072
|
0.331
|
0.381
|
0.008
|
0.091
|
0.077
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006104
|
1.000
|
1.000
|
Hsc_gene_2497.t1
|
Hsc_gene_2497.t1
|
— |
Q10661.1 Dosage compensation protein dpy-30 [Caenorhabditis elegans]
|
KAI1719613.1 dpy-30 motif domain-containing protein [Ditylenchus destructor]
|
No
|
-0.500
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.939|GO:0110165_0.932|GO:0005622_0.890|GO:0008150_0.815|GO:0016020_0.787|GO:0043226_0.769|GO:0009987_0.762|GO:0043227_0.715|GO:0043229_0.685|GO:0071840_0.591|GO:0065007_0.586|GO:0043231_0.585|GO:0016043_0.580|GO:0050789_0.577|GO:0050794_0.561|GO:0005737_0.554|GO:0032991_0.529|GO:0005634_0.507
|
IPR007858+97-138+|IPR049629+98-138+
|
— |
PF05186+97-138+Dpy-30_motif
|
G3DSA:1.20.890.10:FF:000003+89-144+protein_dpy-30_homolog
|
— |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
full
|
1-152
|
0.000
|
— |
9ijj_3U
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.567
|
16673.280
|
4.415
|
-9.000
|
30.263
|
4.605
|
60.526
|
39.474
|
12.500
|
17.763
|
52.632
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
midnightblue
|
998.278
|
703.775
|
1130.333
|
1150.149
|
1553.539
|
1391.326
|
935.323
|
1279.042
|
791.157
|
720.291
|
750.662
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.455
|
0.572
|
0.133
|
0.402
|
— |
-0.563
|
— |
-0.310
|
— | — | — | — | — |
No JSON data available for plots.