Hg_chrom1_TN10mRNA_1440
Organism: Heterodera glycines Gene Locus: chr1:14326209-14328417 Feature type: polypeptideProtein Sequence
Length: 503
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.694 | 1.248 | 0.904 | 0.686 | 1.093 | 0.51 | 0.355 | 1.491 | 1.458 | 1.128 | 0.813 | 0.936 | 2.927 | 0.918 | 0.974 | 1.392 | 0.717 | 0.934 | 0.306 | 1.345 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1378
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|lysosome_vacuole
|
— | — | — | — |
9-31
|
0.986
|
— | — |
0.000
|
— | — |
0.314
|
0.153
|
0.030
|
0.478
|
0.216
|
0.659
|
0.235
|
0.024
|
0.119
|
0.062
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003061
|
1.000
|
2.000
|
Hsc_gene_2495.t1;Hsc_gene_2495.t2
|
Hsc_gene_2495.t1;Hsc_gene_2495.t2
|
— | — |
KAI1719609.1 vacuolar fusion protein CCZ1 like protein [Ditylenchus destructor]
|
No
|
0.080
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016192|GO:0035658
|
GO:0005575_0.896|GO:0110165_0.894|GO:0016020_0.845|GO:0005622_0.825|GO:0043226_0.783|GO:0043229_0.774|GO:0043227_0.760|GO:0043231_0.760|GO:0005737_0.604|GO:0071944_0.553|GO:0005886_0.541
|
IPR013176+309-501+|IPR043987+36-162+|IPR043988+231-362+
|
— |
PF19031+36-162+First_Longin_domain_of_INTU,_CCZ1_and_HPS4|PF19032+231-362+Intu_longin-like_domain_2
|
— |
PTHR13056+309-501+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-503
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.626
|
58161.380
|
6.552
|
0.500
|
24.652
|
18.489
|
46.123
|
53.877
|
13.121
|
11.531
|
46.322
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
488.125
|
865.593
|
528.562
|
411.444
|
396.261
|
351.866
|
421.861
|
425.163
|
250.437
|
672.439
|
491.581
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.942
|
-1.210
|
-0.252
|
— | — |
0.269
|
— | — | — | — | — | — | — |
No JSON data available for plots.