Hg_chrom1_TN10mRNA_1441
Organism: Heterodera glycines Gene Locus: chr1:14328539-14329898 Feature type: polypeptideProtein Sequence
Length: 307
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.72 | 1.061 | 1.244 | 0.674 | 2.226 | 1.002 | 0.698 | 0.814 | 1.158 | 0.88 | 1.135 | 3.832 | 0.724 | 0.564 | 2.061 | 0.791 | 0.32 | 0.543 | 0.501 | 0.766 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1379
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Not_Clustered
|
0.904
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RKEKQRDLCEAHMERMKRQ,KRQADNEEELAIDFRRRKR,KRAAMEMKQLISEIQKLRK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.907
|
0.132
|
0.009
|
0.246
|
0.018
|
0.035
|
0.042
|
0.002
|
0.009
|
0.043
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006106
|
1.000
|
1.000
|
Hsc_gene_2494.t1
|
Hsc_gene_2494.t1
|
— |
Q6DF57.1 G patch domain-containing protein 11 [Xenopus tropicalis]
|
KAH7722385.1 G-patch domain containing protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003676
|
GO:0005575_0.903|GO:0110165_0.899|GO:0005622_0.884|GO:0043226_0.829|GO:0043229_0.813|GO:0043228_0.522|GO:0043232_0.522
|
IPR000467+70-123_72-125_73-122+|IPR025239+252-306_256-306+|IPR039249+2-306+
|
SM00443+70-123+|SM01173+252-306+
|
PF01585+73-122+G-patch_domain|PF13821+256-306+Domain_of_unknown_function_(DUF4187)
|
— |
PTHR21032+2-306+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-163
|
1.000
|
164-307
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.610
|
35939.730
|
5.293
|
-5.500
|
39.414
|
7.492
|
55.375
|
44.625
|
19.218
|
20.195
|
39.414
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
1373.586
|
1372.983
|
932.109
|
912.064
|
954.858
|
783.136
|
1235.644
|
946.737
|
2322.837
|
1590.736
|
1904.494
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.789
|
-0.727
|
— | — |
-0.271
|
0.670
|
— |
0.529
|
— | — | — | — | — |
No JSON data available for plots.